Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   I1A55_RS16385 Genome accession   NZ_CP065040
Coordinates   3178919..3179608 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain Ba1449     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3173919..3184608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A55_RS16350 - 3174005..3174487 (-) 483 WP_008348261.1 flagellar protein FlgN -
  I1A55_RS16355 flgM 3174506..3174769 (-) 264 WP_206114063.1 flagellar biosynthesis anti-sigma factor FlgM -
  I1A55_RS16360 - 3174849..3175268 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  I1A55_RS16365 comFC 3175325..3176011 (-) 687 WP_026050153.1 amidophosphoribosyltransferase Machinery gene
  I1A55_RS16370 - 3176008..3176301 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  I1A55_RS16375 comFA 3176366..3177745 (-) 1380 WP_026050154.1 DEAD/DEAH box helicase Machinery gene
  I1A55_RS16380 - 3177865..3178707 (-) 843 WP_007499966.1 DegV family protein -
  I1A55_RS16385 degU 3178919..3179608 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  I1A55_RS16390 degS 3179673..3180848 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  I1A55_RS16395 - 3181070..3181738 (+) 669 WP_008348276.1 YigZ family protein -
  I1A55_RS16400 - 3181723..3182820 (+) 1098 WP_007499958.1 LCP family protein -
  I1A55_RS16405 - 3182858..3183925 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=506120 I1A55_RS16385 WP_008348273.1 3178919..3179608(-) (degU) [Bacillus altitudinis strain Ba1449]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=506120 I1A55_RS16385 WP_008348273.1 3178919..3179608(-) (degU) [Bacillus altitudinis strain Ba1449]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996