Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   I1A55_RS16375 Genome accession   NZ_CP065040
Coordinates   3176366..3177745 (-) Length   459 a.a.
NCBI ID   WP_026050154.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba1449     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3171366..3182745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A55_RS16340 flgL 3171549..3172460 (-) 912 WP_017368141.1 flagellar hook-associated protein FlgL -
  I1A55_RS16345 flgK 3172469..3173989 (-) 1521 WP_017368142.1 flagellar hook-associated protein FlgK -
  I1A55_RS16350 - 3174005..3174487 (-) 483 WP_008348261.1 flagellar protein FlgN -
  I1A55_RS16355 flgM 3174506..3174769 (-) 264 WP_206114063.1 flagellar biosynthesis anti-sigma factor FlgM -
  I1A55_RS16360 - 3174849..3175268 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  I1A55_RS16365 comFC 3175325..3176011 (-) 687 WP_026050153.1 amidophosphoribosyltransferase Machinery gene
  I1A55_RS16370 - 3176008..3176301 (-) 294 WP_008348267.1 late competence development ComFB family protein -
  I1A55_RS16375 comFA 3176366..3177745 (-) 1380 WP_026050154.1 DEAD/DEAH box helicase Machinery gene
  I1A55_RS16380 - 3177865..3178707 (-) 843 WP_007499966.1 DegV family protein -
  I1A55_RS16385 degU 3178919..3179608 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  I1A55_RS16390 degS 3179673..3180848 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  I1A55_RS16395 - 3181070..3181738 (+) 669 WP_008348276.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52504.06 Da        Isoelectric Point: 9.9737

>NTDB_id=506119 I1A55_RS16375 WP_026050154.1 3176366..3177745(-) (comFA) [Bacillus altitudinis strain Ba1449]
MNLEKAMELSHKLQSRHLLPVECQCTQSELEWLENQGFIHRTPAVDRVASGLICCRCGVSNKRYFALSSCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVARRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKRLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=506119 I1A55_RS16375 WP_026050154.1 3176366..3177745(-) (comFA) [Bacillus altitudinis strain Ba1449]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTGTTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTTATCCATAGAACACCTGCAGTCGATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGGTGTGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTTCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGTTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAAGATGTTGCTCGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAGATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGG
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTTCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
GTACTTTTTTCATTTTGGCTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

97.386

0.508