Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   IYN86_RS07370 Genome accession   NZ_CP064868
Coordinates   1473361..1473678 (+) Length   105 a.a.
NCBI ID   WP_058611611.1    Uniprot ID   -
Organism   Mammaliicoccus sciuri strain 82104     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1468361..1478678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IYN86_RS07330 - 1468506..1468697 (+) 192 WP_078099923.1 YqgQ family protein -
  IYN86_RS07335 - 1468694..1469665 (+) 972 WP_218697436.1 ROK family glucokinase -
  IYN86_RS07340 - 1469665..1469979 (+) 315 WP_058611614.1 MTH1187 family thiamine-binding protein -
  IYN86_RS07345 - 1470009..1470248 (-) 240 WP_016911885.1 DUF2759 domain-containing protein -
  IYN86_RS07350 - 1470346..1470978 (+) 633 WP_058611613.1 MBL fold metallo-hydrolase -
  IYN86_RS07355 - 1471012..1471260 (-) 249 WP_025904960.1 DUF2626 family protein -
  IYN86_RS07360 comGA 1471414..1472316 (+) 903 WP_218697438.1 competence type IV pilus ATPase ComGA Machinery gene
  IYN86_RS07365 comGB 1472306..1473346 (+) 1041 WP_196968298.1 competence type IV pilus assembly protein ComGB -
  IYN86_RS07370 comGC 1473361..1473678 (+) 318 WP_058611611.1 competence type IV pilus major pilin ComGC Machinery gene
  IYN86_RS07375 comGD 1473659..1474105 (+) 447 WP_227531649.1 competence type IV pilus minor pilin ComGD -
  IYN86_RS07380 comGE 1474089..1474364 (+) 276 WP_248559359.1 competence type IV pilus minor pilin ComGE -
  IYN86_RS07385 - 1474361..1474780 (+) 420 WP_248559360.1 competence type IV pilus minor pilin ComGF -
  IYN86_RS07390 - 1475015..1475503 (+) 489 WP_196968295.1 shikimate kinase -
  IYN86_RS07395 gcvT 1475696..1476784 (+) 1089 WP_196968294.1 glycine cleavage system aminomethyltransferase GcvT -
  IYN86_RS07400 gcvPA 1476796..1478139 (+) 1344 WP_058611607.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11605.67 Da        Isoelectric Point: 8.5043

>NTDB_id=505456 IYN86_RS07370 WP_058611611.1 1473361..1473678(+) (comGC) [Mammaliicoccus sciuri strain 82104]
MKRFKFLSKKEGFTLVEMLIVLLIISILLVIIIPNISKQSETVKSTGCQAQVKMVAGQVEAYTLKHDAKPNSINDLISDG
YINQKQLTCKSGETITLENGEVVAH

Nucleotide


Download         Length: 318 bp        

>NTDB_id=505456 IYN86_RS07370 WP_058611611.1 1473361..1473678(+) (comGC) [Mammaliicoccus sciuri strain 82104]
ATGAAAAGATTTAAATTTTTAAGTAAAAAAGAAGGGTTTACATTGGTTGAAATGTTAATTGTCCTTTTAATCATAAGTAT
ATTATTGGTGATCATCATACCAAACATCAGCAAGCAATCAGAGACGGTAAAAAGTACTGGATGCCAAGCACAAGTGAAAA
TGGTAGCTGGTCAAGTAGAAGCTTATACATTGAAACACGATGCTAAACCAAATTCTATAAATGATTTAATAAGTGATGGC
TATATTAACCAAAAGCAACTGACTTGTAAATCAGGAGAAACAATTACGCTAGAAAACGGTGAAGTTGTTGCACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

65.686

97.143

0.638
  comGC Staphylococcus aureus MW2

65.686

97.143

0.638
  comGC Bacillus subtilis subsp. subtilis str. 168

47.312

88.571

0.419
  comYC Streptococcus mutans UA159

48.276

82.857

0.4
  comYC Streptococcus mutans UA140

48.276

82.857

0.4
  comYC Streptococcus gordonii str. Challis substr. CH1

47.674

81.905

0.39
  comGC/cglC Streptococcus mitis NCTC 12261

46.988

79.048

0.371
  comGC/cglC Streptococcus mitis SK321

46.988

79.048

0.371
  comGC Lactococcus lactis subsp. cremoris KW2

46.914

77.143

0.362
  comYC Streptococcus suis isolate S10

48.718

74.286

0.362