Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KO461_RS04150 Genome accession   NZ_CP076449
Coordinates   798039..798620 (+) Length   193 a.a.
NCBI ID   WP_005564219.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain CU1000N     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 793039..803620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO461_RS04135 (KO461_04145) - 793458..793682 (-) 225 WP_228414691.1 hypothetical protein -
  KO461_RS04140 (KO461_04150) gshAB 793689..795962 (-) 2274 WP_061888351.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  KO461_RS04145 (KO461_04155) - 796194..797795 (+) 1602 WP_005542549.1 phosphoethanolamine transferase -
  KO461_RS04150 (KO461_04160) clpP 798039..798620 (+) 582 WP_005564219.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  KO461_RS04155 (KO461_04165) clpX 798630..799862 (+) 1233 WP_005564221.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  KO461_RS04160 (KO461_04170) - 799925..800248 (-) 324 WP_005542557.1 helix-turn-helix domain-containing protein -
  KO461_RS04165 (KO461_04175) - 800241..800591 (-) 351 WP_005561636.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KO461_RS04170 (KO461_04180) - 800708..801553 (-) 846 WP_205764602.1 DUF817 domain-containing protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21334.46 Da        Isoelectric Point: 5.2885

>NTDB_id=502605 KO461_RS04150 WP_005564219.1 798039..798620(+) (clpP) [Aggregatibacter actinomycetemcomitans strain CU1000N]
MSLIPMVVDQTSRGERAYDIYSRLLKDRVIFLSGEVEDNMANLIVAQLLFLESEDPDKDINLYINSPGGSVTAGMAIYDT
MQFIKPDVRTLCIGQACSMGAFLLAGGAAGKRGALPHVRVMIHQPLGGFRGQASDIQIHAQEILKIKSTLNERLAFHTGQ
PIETIEKDTDRDNFMSAQEAKNYGLIDEVFSKR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=502605 KO461_RS04150 WP_005564219.1 798039..798620(+) (clpP) [Aggregatibacter actinomycetemcomitans strain CU1000N]
ATGAGTCTAATTCCTATGGTCGTTGACCAAACTTCCCGCGGTGAACGCGCCTATGACATTTATTCCCGCCTGCTGAAAGA
TCGCGTGATTTTTCTCAGTGGCGAAGTGGAAGACAACATGGCAAACCTGATTGTGGCGCAACTGCTTTTCTTAGAATCGG
AAGATCCCGATAAAGACATCAACCTATACATCAACTCCCCGGGCGGCTCCGTCACTGCCGGCATGGCGATTTACGACACC
ATGCAATTTATTAAACCGGATGTTCGCACCCTGTGTATCGGTCAAGCCTGTTCCATGGGCGCATTTTTATTAGCCGGCGG
CGCAGCGGGCAAACGCGGCGCATTACCGCACGTCCGCGTGATGATTCACCAACCGCTCGGCGGTTTCCGTGGTCAGGCAT
CGGATATTCAGATTCATGCGCAAGAAATTCTGAAAATCAAAAGTACCCTTAATGAACGCCTGGCGTTCCACACCGGACAA
CCCATTGAAACCATAGAAAAAGACACCGACCGCGACAATTTTATGTCGGCGCAGGAAGCCAAAAATTACGGCTTAATTGA
CGAAGTGTTCAGCAAACGCTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.063

98.964

0.674
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

68.421

98.446

0.674
  clpP Streptococcus mutans UA159

56.021

98.964

0.554
  clpP Streptococcus pneumoniae R6

55.729

99.482

0.554
  clpP Streptococcus pneumoniae TIGR4

55.729

99.482

0.554
  clpP Streptococcus thermophilus LMD-9

55.729

99.482

0.554
  clpP Streptococcus thermophilus LMG 18311

55.729

99.482

0.554
  clpP Streptococcus pneumoniae Rx1

55.729

99.482

0.554
  clpP Streptococcus pneumoniae D39

55.729

99.482

0.554
  clpP Streptococcus pyogenes JRS4

54.737

98.446

0.539
  clpP Streptococcus pyogenes MGAS315

54.737

98.446

0.539
  clpP Lactococcus lactis subsp. cremoris KW2

54.211

98.446

0.534
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.158

98.446

0.523