Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   KO461_RS04155 Genome accession   NZ_CP076449
Coordinates   798630..799862 (+) Length   410 a.a.
NCBI ID   WP_005564221.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain CU1000N     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 793630..804862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO461_RS04140 (KO461_04150) gshAB 793689..795962 (-) 2274 WP_061888351.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  KO461_RS04145 (KO461_04155) - 796194..797795 (+) 1602 WP_005542549.1 phosphoethanolamine transferase -
  KO461_RS04150 (KO461_04160) clpP 798039..798620 (+) 582 WP_005564219.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  KO461_RS04155 (KO461_04165) clpX 798630..799862 (+) 1233 WP_005564221.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  KO461_RS04160 (KO461_04170) - 799925..800248 (-) 324 WP_005542557.1 helix-turn-helix domain-containing protein -
  KO461_RS04165 (KO461_04175) - 800241..800591 (-) 351 WP_005561636.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KO461_RS04170 (KO461_04180) - 800708..801553 (-) 846 WP_205764602.1 DUF817 domain-containing protein -
  KO461_RS04175 (KO461_04185) - 801626..803785 (-) 2160 WP_205764603.1 heavy metal translocating P-type ATPase -
  KO461_RS04180 (KO461_04190) - 803872..804084 (-) 213 WP_005542565.1 heavy-metal-associated domain-containing protein -
  KO461_RS04185 (KO461_04195) - 804178..804564 (+) 387 Protein_822 MerR family DNA-binding protein -
  KO461_RS04190 - 804625..804840 (+) 216 WP_005595211.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45333.92 Da        Isoelectric Point: 4.8608

>NTDB_id=502606 KO461_RS04155 WP_005564221.1 798630..799862(+) (clpX) [Aggregatibacter actinomycetemcomitans strain CU1000N]
MAKDKELRCSFCGKEQDEVNKLIAGTSGYICNECIELCHDMLHNEEHSEEAETAKQQELPTPHQIRAHLDDYVIGQDYAK
KVLAVAVYNHYKRLRTKHQTNDVELGKSNILLIGPTGSGKTLLAETMARMLNVPFAMADATTLTEAGYVGEDVENVLQKL
LQNCDYDIERAEQGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLIEGTIASIPPQGGRKHPQQEMLRIDTSKILF
ICGGAFAGLDKVIEKRTSVATAIGFGAEIKSEKDKATLTDLFKQVEPDDLMKYGLIPEFIGRLPVVAPLSELDGEALVRI
LTEPKNALCKQYQALFGLEEVALEFTNEALTAMAKKALARKTGARGLRSIIEGVLLDTMYDLPSLEGLKKVVVNENVIND
NQSPELIYSN

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=502606 KO461_RS04155 WP_005564221.1 798630..799862(+) (clpX) [Aggregatibacter actinomycetemcomitans strain CU1000N]
ATGGCAAAAGATAAAGAATTACGCTGTTCTTTCTGTGGCAAAGAACAAGACGAAGTGAATAAACTTATCGCCGGCACCTC
CGGTTACATTTGTAACGAATGTATCGAACTGTGCCATGATATGCTGCACAACGAAGAACATAGCGAAGAAGCGGAAACCG
CAAAGCAACAGGAATTACCGACACCCCACCAAATCCGCGCTCATTTGGACGATTATGTCATCGGTCAGGATTACGCCAAA
AAAGTGTTGGCGGTGGCGGTGTATAACCACTACAAACGCCTGCGCACTAAGCATCAGACGAACGATGTGGAACTGGGCAA
AAGCAACATTCTGCTTATCGGCCCGACCGGTAGCGGCAAAACCTTATTGGCGGAAACCATGGCGCGTATGTTAAACGTGC
CTTTCGCCATGGCGGATGCCACCACCTTAACGGAAGCCGGTTATGTGGGCGAAGATGTGGAAAACGTGTTGCAGAAATTG
CTACAAAACTGCGATTACGACATTGAACGCGCAGAACAAGGCATTATCTACATCGACGAAATCGACAAAATCACCCGCAA
ATCGGAAAATCCGTCCATTACCCGTGATGTCTCCGGCGAAGGCGTACAACAAGCCTTATTAAAACTCATCGAAGGCACCA
TCGCCTCCATTCCGCCACAAGGCGGACGCAAACACCCGCAACAGGAAATGTTACGCATCGACACCTCCAAAATCCTATTC
ATTTGCGGCGGTGCGTTTGCGGGCTTGGATAAAGTCATCGAAAAACGCACCAGCGTCGCCACCGCCATCGGTTTCGGCGC
CGAAATCAAGAGCGAAAAAGACAAAGCGACACTGACCGACTTATTCAAACAGGTGGAACCGGACGATTTAATGAAATACG
GCTTAATCCCGGAATTTATCGGACGTTTGCCGGTGGTGGCGCCATTAAGCGAATTGGACGGAGAAGCCTTGGTACGTATT
CTCACCGAACCGAAAAATGCCCTGTGCAAGCAATATCAGGCATTGTTCGGTTTAGAAGAGGTGGCATTGGAATTCACCAA
CGAAGCCCTAACCGCAATGGCGAAAAAAGCCCTTGCCCGCAAAACCGGCGCCCGCGGCTTACGTTCCATCATCGAAGGCG
TCTTGCTTGACACCATGTACGACTTGCCATCCTTGGAAGGCTTGAAAAAAGTCGTGGTCAACGAAAACGTCATCAACGAC
AACCAATCCCCGGAATTGATTTATTCCAACTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-43)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(312-387)

AAA domain (Cdc48 subfamily) (AAA_2)

(107-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

59.753

98.78

0.59
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.926

99.024

0.544