Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IQ966_RS03675 Genome accession   NZ_CP064275
Coordinates   660171..661412 (-) Length   413 a.a.
NCBI ID   WP_014458489.1    Uniprot ID   A0A8D3WZ79
Organism   Priestia megaterium strain B1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 655171..666412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQ966_RS03655 spoVS 655730..655990 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  IQ966_RS03660 - 656214..657011 (-) 798 WP_042991933.1 TIGR00282 family metallophosphoesterase -
  IQ966_RS03665 rny 657093..658652 (-) 1560 WP_013058803.1 ribonuclease Y -
  IQ966_RS03670 recA 658933..659970 (-) 1038 WP_013058804.1 recombinase RecA Machinery gene
  IQ966_RS03675 cinA 660171..661412 (-) 1242 WP_014458489.1 competence/damage-inducible protein A Machinery gene
  IQ966_RS03680 pgsA 661429..662013 (-) 585 WP_013058806.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IQ966_RS03685 - 662158..663141 (-) 984 WP_226554946.1 helix-turn-helix domain-containing protein -
  IQ966_RS03690 - 663154..663945 (-) 792 WP_013058808.1 DUF3388 domain-containing protein -
  IQ966_RS03695 - 664159..664419 (-) 261 WP_013058809.1 DUF3243 domain-containing protein -
  IQ966_RS03700 - 664485..665210 (-) 726 WP_014458485.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44842.98 Da        Isoelectric Point: 4.9863

>NTDB_id=500490 IQ966_RS03675 WP_014458489.1 660171..661412(-) (cinA) [Priestia megaterium strain B1]
MMNAEIIGVGSELLLGQIANTNAQYLSKKLAELGINVYYHTVVGDNAQRLKEVIATAQTRAELIIFTGGLGPTKDDLTKE
TIASVLGVELTTNAEALESIEAYFKQSNRVMTPNNKKQAIVLEGSAVLPNDYGMAPGMGLTVDGKHYMLFPGPPKELYPM
YESYGQEFLAQKLELKESIESRVLRFFGIGESQLETEIEDLLDAQTNPTIAPLAGDGEVTLRLTAKHTDTAEAQRMLDEV
EKTISERVGEYLYGYEATSLHNELVKELTAQGLTIASAESLTGGLFSERLTTVSGAGEVVKGSLVAYHYEIKQSILGVSE
HTLNQYGAVSEQCAAEMAQRIQQLCKTDIGIGFTGVAGPSKQEGHPVGTVYIGVAYKGQAPQVYSLQLSGSRQGIRSRTV
NYGCHYVLKMIKK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=500490 IQ966_RS03675 WP_014458489.1 660171..661412(-) (cinA) [Priestia megaterium strain B1]
ATGATGAACGCTGAAATTATTGGAGTCGGCTCTGAGCTGCTGCTTGGACAAATTGCCAATACAAACGCTCAGTATTTATC
GAAAAAATTAGCCGAACTTGGAATTAATGTTTACTATCATACGGTAGTAGGAGATAATGCACAGCGCTTAAAAGAAGTGA
TTGCTACAGCTCAGACGCGTGCGGAGTTAATTATTTTCACAGGCGGGCTTGGTCCTACAAAAGATGATTTAACAAAAGAA
ACAATTGCGAGTGTGCTAGGAGTAGAGCTGACAACAAATGCAGAAGCACTTGAAAGCATTGAAGCCTATTTCAAACAGTC
AAATCGTGTCATGACACCTAACAATAAAAAACAGGCAATTGTGCTAGAAGGTTCAGCAGTGCTCCCTAACGATTACGGAA
TGGCTCCAGGTATGGGGCTTACGGTAGATGGAAAACACTATATGCTATTTCCCGGGCCACCAAAAGAGCTTTATCCAATG
TATGAATCGTACGGTCAAGAATTTTTAGCTCAAAAGCTTGAATTAAAAGAAAGTATTGAATCACGCGTTCTTCGCTTTTT
CGGAATAGGAGAATCACAGCTTGAGACGGAAATTGAAGATTTGCTTGATGCGCAAACCAACCCGACGATTGCGCCGCTAG
CGGGAGATGGAGAAGTGACGCTTCGCTTAACTGCTAAGCACACTGATACTGCTGAAGCACAGCGCATGTTAGACGAAGTG
GAAAAAACCATTTCAGAGCGCGTAGGCGAGTATTTGTATGGATACGAAGCAACTTCTTTACATAATGAATTGGTAAAAGA
ATTAACGGCACAAGGATTAACGATTGCTTCAGCTGAGAGTTTAACCGGCGGTTTATTTAGCGAACGCTTAACAACTGTTT
CAGGTGCTGGAGAAGTTGTAAAAGGCAGCCTGGTCGCCTATCATTATGAAATCAAGCAAAGTATTCTCGGAGTGAGCGAA
CACACGCTGAATCAGTACGGAGCCGTTAGCGAGCAGTGCGCGGCTGAAATGGCTCAGCGTATTCAACAGTTATGCAAAAC
GGATATTGGCATCGGGTTTACAGGTGTAGCTGGACCCTCCAAACAAGAAGGACATCCTGTAGGAACAGTATATATAGGAG
TAGCCTATAAAGGTCAAGCTCCTCAAGTTTACAGCCTGCAGCTATCTGGAAGTCGCCAGGGGATTCGTTCACGAACAGTT
AATTATGGCTGTCATTACGTATTAAAGATGATAAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.024

99.274

0.586
  cinA Streptococcus mitis NCTC 12261

47.143

100

0.479
  cinA Streptococcus mitis SK321

46.429

100

0.472
  cinA Streptococcus pneumoniae TIGR4

46.19

100

0.47
  cinA Streptococcus pneumoniae Rx1

45.714

100

0.465
  cinA Streptococcus pneumoniae R6

45.714

100

0.465
  cinA Streptococcus pneumoniae D39

45.476

100

0.462
  cinA Streptococcus mutans UA159

45.122

99.274

0.448
  cinA Streptococcus suis isolate S10

39.947

91.525

0.366