Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IS519_RS10250 Genome accession   NZ_CP064170
Coordinates   2293212..2294324 (-) Length   370 a.a.
NCBI ID   WP_248638702.1    Uniprot ID   -
Organism   Vibrio crassostreae strain ED395     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2288212..2299324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IS519_RS10220 (IS519_10215) hemF 2288734..2289651 (-) 918 WP_248638697.1 oxygen-dependent coproporphyrinogen oxidase -
  IS519_RS10225 (IS519_10220) - 2289671..2290228 (-) 558 WP_248638698.1 L-threonylcarbamoyladenylate synthase -
  IS519_RS10230 (IS519_10225) purE 2290424..2290909 (+) 486 WP_004735777.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IS519_RS10235 (IS519_10230) - 2290915..2292045 (+) 1131 WP_248638699.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IS519_RS10240 (IS519_10235) - 2292151..2292720 (-) 570 WP_248638700.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  IS519_RS10245 (IS519_10240) - 2292733..2293209 (-) 477 WP_048657837.1 DUF494 family protein -
  IS519_RS10250 (IS519_10245) dprA 2293212..2294324 (-) 1113 WP_248638702.1 DNA-processing protein DprA Machinery gene
  IS519_RS10255 (IS519_10250) - 2294321..2295412 (-) 1092 WP_248638704.1 LysM peptidoglycan-binding domain-containing protein -
  IS519_RS10260 (IS519_10255) def 2295553..2296065 (+) 513 WP_017058772.1 peptide deformylase -
  IS519_RS10265 (IS519_10260) fmt 2296103..2297050 (+) 948 WP_017058773.1 methionyl-tRNA formyltransferase -
  IS519_RS10270 (IS519_10265) rsmB 2297143..2298423 (+) 1281 WP_017058774.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40018.78 Da        Isoelectric Point: 7.2723

>NTDB_id=499933 IS519_RS10250 WP_248638702.1 2293212..2294324(-) (dprA) [Vibrio crassostreae strain ED395]
MNEQQLSAWLTLSFVPQLGGKRLSRLLSIDSPSNIVGYSSQQLQAIGLSAKQISYLRQQAPKEVEACLAWQASQTNHHIM
TPNCSHYPKLLSEIASAPSVLFVKGHVEKLIEPQIAMVGSRNASIEGLQTAKSFAKEFVQNGLIVTSGLALGIDGYAHDG
ALDKGGETFAVLGSGLDSIYPARHRNLAERICENGALISEFRPSAKPRPEHFPRRNRIISGLSLGTLVVEAAEKSGSLIT
ARYAMEQGREVFALPGSIHNPTSRGGNSLIKAGACLVQSAQDVLIEIKSLLDWSIDQQPSLFEPTPNKSENEQLPFPQLL
ANVGLEATPVDILAQRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=499933 IS519_RS10250 WP_248638702.1 2293212..2294324(-) (dprA) [Vibrio crassostreae strain ED395]
GTGAATGAGCAACAACTGAGTGCTTGGTTAACTTTAAGTTTTGTTCCGCAGTTGGGTGGCAAGCGCCTTTCTCGACTGCT
GAGCATTGATTCCCCATCGAATATTGTTGGTTACTCCAGCCAACAGCTGCAAGCGATTGGTTTGTCAGCCAAGCAAATCT
CCTACTTAAGACAGCAAGCCCCTAAAGAAGTGGAGGCTTGCCTGGCGTGGCAAGCGAGTCAGACCAACCATCACATCATG
ACCCCTAATTGCTCGCATTATCCTAAATTGCTGAGTGAGATCGCCTCTGCGCCCAGTGTTCTTTTCGTCAAGGGGCACGT
TGAAAAACTGATTGAGCCTCAAATCGCTATGGTCGGCAGTCGCAATGCCAGTATTGAAGGGCTGCAAACTGCGAAGTCCT
TCGCTAAAGAGTTTGTCCAAAACGGCTTGATTGTCACCAGTGGCTTAGCGTTAGGCATAGATGGTTACGCTCATGATGGT
GCTTTAGATAAAGGAGGGGAAACTTTTGCGGTGTTGGGCTCTGGCTTGGACTCCATTTACCCTGCACGACACCGAAATCT
CGCGGAGAGGATCTGTGAGAATGGTGCGTTGATTTCAGAGTTTCGCCCAAGCGCTAAGCCTCGACCTGAACATTTCCCTC
GGCGTAACCGTATTATAAGTGGGTTGTCTTTGGGGACTCTTGTTGTTGAGGCGGCTGAGAAAAGCGGTTCTCTGATTACG
GCGCGTTATGCGATGGAGCAAGGTCGCGAAGTGTTTGCACTTCCCGGTTCGATTCATAACCCAACCAGTCGCGGAGGCAA
CAGTCTAATTAAGGCAGGAGCATGTTTGGTACAGAGCGCTCAAGATGTTCTAATTGAAATAAAGAGTCTGTTAGACTGGT
CTATAGATCAGCAACCCAGTTTGTTTGAACCTACGCCGAACAAGAGTGAAAATGAACAATTGCCATTTCCACAGCTGTTA
GCTAACGTAGGATTAGAGGCGACACCCGTTGATATTTTGGCACAGAGAACCCATATACCTGTGCATGAGGTCATGATGCA
GCTTTTAGAGCTTGAGCTCTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAAGGGGAGAGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)

DprA winged helix domain (DprA_WH)

(304-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

67.751

99.73

0.676
  dprA Vibrio cholerae strain A1552

59.091

100

0.597
  dprA Glaesserella parasuis strain SC1401

48.387

100

0.486
  dprA Legionella pneumophila strain ERS1305867

47.866

88.649

0.424
  dprA Neisseria meningitidis MC58

37.94

100

0.408
  dprA Neisseria meningitidis strain C311

37.94

100

0.408
  dprA Haemophilus influenzae Rd KW20

44.51

91.081

0.405
  dprA Neisseria gonorrhoeae MS11

37.215

100

0.397
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.397