Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   IRJ27_RS12935 Genome accession   NZ_CP064095
Coordinates   2533128..2533850 (+) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain N1303-2Ay     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2528128..2538850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ27_RS12910 degS 2528439..2529596 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  IRJ27_RS12915 degU 2529679..2530368 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IRJ27_RS12920 fakBA 2530466..2531311 (+) 846 WP_003244125.1 DegV family protein -
  IRJ27_RS12925 comFA 2531417..2532808 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  IRJ27_RS12930 comFB 2532868..2533164 (+) 297 WP_003227989.1 late competence protein ComFB -
  IRJ27_RS12935 comFC 2533128..2533850 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  IRJ27_RS12940 yvyF 2533924..2534343 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  IRJ27_RS12945 flgM 2534424..2534690 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  IRJ27_RS12950 flgN 2534706..2535188 (+) 483 WP_003227999.1 flagellar protein FlgN -
  IRJ27_RS12955 flgK 2535207..2536730 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  IRJ27_RS12960 flgL 2536741..2537637 (+) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  IRJ27_RS12965 yviE 2537684..2538259 (+) 576 WP_003243053.1 DUF6470 family protein -
  IRJ27_RS12970 fliW 2538280..2538711 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=499406 IRJ27_RS12935 WP_003227991.1 2533128..2533850(+) (comFC) [Bacillus subtilis strain N1303-2Ay]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=499406 IRJ27_RS12935 WP_003227991.1 2533128..2533850(+) (comFC) [Bacillus subtilis strain N1303-2Ay]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1