Detailed information NTG0498987

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: IRB21_RS19425
• Genome accession: NZ_CP064089
• Coordinates: 3713658..3714344 (-)
• Length: 228 a.a.
• NCBI ID: WP_172793290.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain N435-3
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3708658..3719344

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IRB21_RS19390	fliW	3708794..3709228 (-)	435	WP_025208061.1	flagellar assembly protein FliW	-
IRB21_RS19395	-	3709257..3709835 (-)	579	WP_024719238.1	DUF6470 family protein	-
IRB21_RS19400	flgL	3709882..3710793 (-)	912	WP_008348257.1	flagellar hook-associated protein FlgL	-
IRB21_RS19405	flgK	3710802..3712322 (-)	1521	WP_024719239.1	flagellar hook-associated protein FlgK	-
IRB21_RS19410	-	3712338..3712820 (-)	483	WP_007499977.1	flagellar protein FlgN	-
IRB21_RS19415	flgM	3712839..3713102 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
IRB21_RS19420	-	3713182..3713601 (-)	420	WP_025208062.1	TIGR03826 family flagellar region protein	-
IRB21_RS19425	comFC	3713658..3714344 (-)	687	WP_172793290.1	ComF family protein	Machinery gene
IRB21_RS19430	-	3714341..3714634 (-)	294	WP_008348267.1	competence protein ComFB	-
IRB21_RS19435	comFA	3714699..3715826 (-)	1128	WP_242731121.1	DEAD/DEAH box helicase	Machinery gene
IRB21_RS19440	-	3716198..3717040 (-)	843	WP_024719242.1	DegV family protein	-
IRB21_RS19445	degU	3717252..3717941 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
IRB21_RS19450	degS	3718006..3719181 (-)	1176	WP_008360205.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26116.62 Da
• Isoelectric Point: 10.1473

>NTDB_id=498987 IRB21_RS19425 WP_172793290.1 3713658..3714344(-) (comFC) [Bacillus altitudinis strain N435-3]
MICPICESHFVAAFTWKSFLLLNEDRLCVACKNHLMKIQGPTCPKCGRAQSNDQLCQDCSRWDKRRDFAEILVMNRSVYA
YNDFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH
QSKQSKKRKNERLHQQNLFQLRQSNPIVLKDIILIDDIYTTGATVYHAAKILKDAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=498987 IRB21_RS19425 WP_172793290.1 3713658..3714344(-) (comFC) [Bacillus altitudinis strain N435-3]
TTGATTTGTCCAATTTGTGAGAGCCATTTTGTGGCTGCTTTTACATGGAAATCATTCCTACTATTAAATGAAGATCGTTT
ATGTGTAGCATGTAAGAACCACCTGATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATCAAATGATC
AATTGTGTCAGGATTGTTCAAGGTGGGATAAACGACGAGATTTTGCTGAGATTCTTGTAATGAATCGGTCTGTTTATGCT
TACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA
TGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTCCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA
AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT
CAAAGTAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGTCAAACCCTAT
CGTTCTAAAGGATATCATATTAATCGATGATATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG
ACGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (161-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.565	100	0.5
comFC/cflB	Streptococcus mitis SK321	38.428	100	0.386
comFC/cflB	Streptococcus mitis NCTC 12261	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae R6	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae TIGR4	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae Rx1	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae D39	37.118	100	0.373