Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IRB21_RS19445 Genome accession   NZ_CP064089
Coordinates   3717252..3717941 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain N435-3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3712252..3722941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRB21_RS19410 - 3712338..3712820 (-) 483 WP_007499977.1 flagellar protein FlgN -
  IRB21_RS19415 flgM 3712839..3713102 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  IRB21_RS19420 - 3713182..3713601 (-) 420 WP_025208062.1 TIGR03826 family flagellar region protein -
  IRB21_RS19425 comFC 3713658..3714344 (-) 687 WP_172793290.1 ComF family protein Machinery gene
  IRB21_RS19430 - 3714341..3714634 (-) 294 WP_008348267.1 competence protein ComFB -
  IRB21_RS19435 comFA 3714699..3715826 (-) 1128 WP_242731121.1 DEAD/DEAH box helicase Machinery gene
  IRB21_RS19440 - 3716198..3717040 (-) 843 WP_024719242.1 DegV family protein -
  IRB21_RS19445 degU 3717252..3717941 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  IRB21_RS19450 degS 3718006..3719181 (-) 1176 WP_008360205.1 sensor histidine kinase Regulator
  IRB21_RS19455 - 3719403..3720071 (+) 669 WP_035701587.1 YigZ family protein -
  IRB21_RS19460 - 3720056..3721153 (+) 1098 WP_007499958.1 LCP family protein -
  IRB21_RS19465 - 3721191..3722258 (-) 1068 WP_007499956.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=498989 IRB21_RS19445 WP_008348273.1 3717252..3717941(-) (degU) [Bacillus altitudinis strain N435-3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=498989 IRB21_RS19445 WP_008348273.1 3717252..3717941(-) (degU) [Bacillus altitudinis strain N435-3]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGGGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCCTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATAAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGTTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996