Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H9J98_RS16270 Genome accession   NZ_CP064041
Coordinates   3468243..3469355 (-) Length   370 a.a.
NCBI ID   WP_222133797.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain XMO116     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3463243..3474355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9J98_RS16240 (H9J98_16120) hemF 3463705..3464622 (-) 918 WP_020904437.1 oxygen-dependent coproporphyrinogen oxidase -
  H9J98_RS16245 (H9J98_16125) - 3464670..3465227 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  H9J98_RS16250 (H9J98_16130) purE 3465427..3465912 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  H9J98_RS16255 (H9J98_16135) - 3465917..3467050 (+) 1134 WP_029864578.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  H9J98_RS16260 (H9J98_16140) - 3467113..3467682 (-) 570 WP_029864579.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  H9J98_RS16265 (H9J98_16145) - 3467761..3468240 (-) 480 WP_005461440.1 DUF494 family protein -
  H9J98_RS16270 (H9J98_16150) dprA 3468243..3469355 (-) 1113 WP_222133797.1 DNA-processing protein DprA Machinery gene
  H9J98_RS16275 (H9J98_16155) - 3469339..3470433 (-) 1095 WP_222133798.1 LysM peptidoglycan-binding domain-containing protein -
  H9J98_RS16280 (H9J98_16160) def 3470572..3471090 (+) 519 WP_005379068.1 peptide deformylase -
  H9J98_RS16285 (H9J98_16165) fmt 3471124..3472071 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  H9J98_RS16290 (H9J98_16170) rsmB 3472152..3473435 (+) 1284 WP_005386654.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39874.44 Da        Isoelectric Point: 6.2347

>NTDB_id=498667 H9J98_RS16270 WP_222133797.1 3468243..3469355(-) (dprA) [Vibrio parahaemolyticus strain XMO116]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPSLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVDQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=498667 H9J98_RS16270 WP_222133797.1 3468243..3469355(-) (dprA) [Vibrio parahaemolyticus strain XMO116]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCCTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCTCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTGTTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCTAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAATCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTTGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTGATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Legionella pneumophila strain ERS1305867

47.077

87.838

0.414
  dprA Neisseria meningitidis strain C311

37.692

100

0.397
  dprA Neisseria meningitidis MC58

37.692

100

0.397
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.373