Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   H9K44_RS15325 Genome accession   NZ_CP064035
Coordinates   3285032..3286144 (-) Length   370 a.a.
NCBI ID   WP_141180512.1    Uniprot ID   A0A7Y0SDV2
Organism   Vibrio parahaemolyticus strain DLM1799     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3280032..3291144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H9K44_RS15295 (H9K44_15280) hemF 3280493..3281410 (-) 918 WP_024699626.1 oxygen-dependent coproporphyrinogen oxidase -
  H9K44_RS15300 (H9K44_15285) - 3281458..3282015 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  H9K44_RS15305 (H9K44_15290) purE 3282215..3282700 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  H9K44_RS15310 (H9K44_15295) - 3282705..3283832 (+) 1128 WP_025537608.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  H9K44_RS15315 (H9K44_15300) - 3283902..3284471 (-) 570 WP_025537610.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  H9K44_RS15320 (H9K44_15305) - 3284550..3285029 (-) 480 WP_005461440.1 DUF494 family protein -
  H9K44_RS15325 (H9K44_15310) dprA 3285032..3286144 (-) 1113 WP_141180512.1 DNA-processing protein DprA Machinery gene
  H9K44_RS15330 (H9K44_15315) - 3286128..3287222 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  H9K44_RS15335 (H9K44_15320) def 3287361..3287879 (+) 519 WP_005461416.1 peptide deformylase -
  H9K44_RS15340 (H9K44_15325) fmt 3287913..3288860 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  H9K44_RS15345 (H9K44_15330) rsmB 3288941..3290224 (+) 1284 WP_141180513.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39975.59 Da        Isoelectric Point: 6.5881

>NTDB_id=498620 H9K44_RS15325 WP_141180512.1 3285032..3286144(-) (dprA) [Vibrio parahaemolyticus strain DLM1799]
MKPRNNDSDLVAWLKLSCLPGIGGVKMNKLLAKDTPRNIISSSSEQLYQFGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDIRDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=498620 H9K44_RS15325 WP_141180512.1 3285032..3286144(-) (dprA) [Vibrio parahaemolyticus strain DLM1799]
ATGAAACCACGCAATAACGACAGTGACCTTGTTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAGTTCCTCTTCTGAACAGCTCTATCAATTTGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CGCGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGTGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCGCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y0SDV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.054

100

0.841
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.649

100

0.47
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45

91.892

0.414
  dprA Neisseria meningitidis strain C311

37.374

100

0.4
  dprA Neisseria meningitidis MC58

37.374

100

0.4
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.381
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.378