Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ISN34_RS17320 Genome accession   NZ_CP064001
Coordinates   4010448..4011704 (+) Length   418 a.a.
NCBI ID   WP_060748003.1    Uniprot ID   A0A120EXT5
Organism   Xanthomonas translucens pv. translucens strain XtKm34     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4005448..4016704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISN34_RS17295 (ISN34_17275) - 4006532..4006827 (+) 296 Protein_3429 type II toxin-antitoxin system RelE/ParE family toxin -
  ISN34_RS17300 (ISN34_17280) - 4006824..4007123 (+) 300 WP_237653908.1 addiction module antidote protein -
  ISN34_RS17305 (ISN34_17285) pilB 4007151..4008887 (-) 1737 WP_058363696.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ISN34_RS17310 (ISN34_17290) - 4009150..4009548 (+) 399 WP_196484464.1 hypothetical protein -
  ISN34_RS17315 (ISN34_17295) pilA/pilAI 4009633..4010064 (-) 432 WP_060744724.1 pilin Machinery gene
  ISN34_RS17320 (ISN34_17300) pilC 4010448..4011704 (+) 1257 WP_060748003.1 type II secretion system F family protein Machinery gene
  ISN34_RS17325 (ISN34_17305) - 4011711..4012574 (+) 864 WP_060748002.1 A24 family peptidase -
  ISN34_RS17330 (ISN34_17310) coaE 4012588..4013208 (+) 621 WP_058360087.1 dephospho-CoA kinase -
  ISN34_RS17335 (ISN34_17315) - 4013233..4014602 (-) 1370 Protein_3437 IS5 family transposase -
  ISN34_RS17340 (ISN34_17320) - 4014844..4016178 (-) 1335 WP_058359046.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45611.90 Da        Isoelectric Point: 10.1825

>NTDB_id=498451 ISN34_RS17320 WP_060748003.1 4010448..4011704(+) (pilC) [Xanthomonas translucens pv. translucens strain XtKm34]
MSATRSAVSKEPVARNISQQVPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGAAGSKISTKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALLVSSILLVWVVPQFEEVFKGFGAELPAFTQMIVAASRFMVSYWWI
LLILLIGTIGGFIFAYKRSPSMQHGMDRLILKVPVIGQIMHNSSVARFSRTLAVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLASVV

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=498451 ISN34_RS17320 WP_060748003.1 4010448..4011704(+) (pilC) [Xanthomonas translucens pv. translucens strain XtKm34]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATATCAGCCAGCAGGTCCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACCCCGTCGGTGGTCAAGCCGAAACCCAAGCCCCTGTTCGGCGCCGCCGGCAGCAAGATCAGTACCAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGCGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGATGAGCTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCGGGCGTGCTCGAA
ACGGTGCTGGAGACGGTCGCGACCTACAAGGAAAATATCGAGGCGTTGAAGGGTAAGATCAAGAAGGCCTTGTTCTATCC
AGCCATGGTCATGGCAGTCGCACTGCTGGTCAGTTCGATCCTGTTGGTATGGGTGGTGCCGCAGTTCGAGGAAGTATTCA
AGGGCTTTGGCGCGGAGCTACCGGCCTTTACCCAGATGATCGTGGCCGCCTCACGCTTCATGGTGTCTTATTGGTGGATA
CTGCTGATTCTGCTCATTGGCACCATTGGCGGCTTCATCTTCGCCTACAAGCGCTCACCATCGATGCAGCATGGCATGGA
CCGCTTGATCTTGAAGGTGCCAGTCATAGGCCAGATCATGCACAACAGCTCGGTAGCTCGCTTCTCACGGACCCTCGCGG
TGACCTTCCGCGCTGGCGTGCCGCTGGTCGAGGCGTTGGACATCGTCGCAGGCGCTACCGGCAACAGCGTCTACGAGAAA
GCCGTGCTGCGCATGCGCGACGACGTGTCGGTGGGCTACCCCGTCAACGTGGCGATGAAGCAGGCCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAGGCCGGTGCATTGGATGCGATGCTGTTCAAGGTAGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTCGAGCCAATGATCATGGTGTTCATCGGGACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGTTAGCGTCCGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A120EXT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.737

0.502
  pilC Legionella pneumophila strain ERS1305867

51.733

96.651

0.5
  pilC Acinetobacter baumannii D1279779

51.117

96.411

0.493
  pilC Acinetobacter baylyi ADP1

50.62

96.411

0.488
  pilG Neisseria gonorrhoeae MS11

43.25

95.694

0.414
  pilG Neisseria meningitidis 44/76-A

42.75

95.694

0.409
  pilC Vibrio cholerae strain A1552

41.584

96.651

0.402
  pilC Vibrio campbellii strain DS40M4

40.955

95.215

0.39