Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   IRP63_RS14395 Genome accession   NZ_CP063959
Coordinates   2872034..2872489 (-) Length   151 a.a.
NCBI ID   WP_013724251.1    Uniprot ID   A0A0A0I8A2
Organism   Clostridium botulinum strain 3859/11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2867034..2877489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRP63_RS14370 (IRP63_13695) rplI 2867838..2868281 (-) 444 WP_039256449.1 50S ribosomal protein L9 -
  IRP63_RS14375 (IRP63_13700) - 2868284..2870269 (-) 1986 WP_039256448.1 DHH family phosphoesterase -
  IRP63_RS14380 (IRP63_13705) - 2870271..2871272 (-) 1002 WP_223315462.1 YybS family protein -
  IRP63_RS14385 (IRP63_13710) - 2871291..2871602 (-) 312 WP_039256446.1 MazG-like family protein -
  IRP63_RS14390 (IRP63_13715) rpsR 2871756..2871992 (-) 237 WP_003374900.1 30S ribosomal protein S18 -
  IRP63_RS14395 (IRP63_13720) ssbA 2872034..2872489 (-) 456 WP_013724251.1 single-stranded DNA-binding protein Machinery gene
  IRP63_RS14400 (IRP63_13725) rpsF 2872501..2872788 (-) 288 WP_013724250.1 30S ribosomal protein S6 -
  IRP63_RS14405 (IRP63_13730) - 2872919..2873128 (-) 210 WP_039256445.1 DUF951 domain-containing protein -
  IRP63_RS14410 (IRP63_13735) - 2873363..2874304 (-) 942 WP_039259958.1 transposase -
  IRP63_RS14415 (IRP63_13740) - 2874487..2875125 (+) 639 WP_039256444.1 LysE family transporter -
  IRP63_RS14420 (IRP63_13745) yyaC 2875216..2875830 (+) 615 WP_039256443.1 spore protease YyaC -
  IRP63_RS14425 (IRP63_13750) - 2875877..2876374 (-) 498 WP_039256442.1 DUF4446 family protein -
  IRP63_RS14430 (IRP63_13755) - 2876421..2877269 (-) 849 WP_039256540.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16573.33 Da        Isoelectric Point: 4.5507

>NTDB_id=498178 IRP63_RS14395 WP_013724251.1 2872034..2872489(-) (ssbA) [Clostridium botulinum strain 3859/11]
MNKVVLVGRLTKDPELRFTPGTGKAVATFTLAVNRRFKSPGQPEADFLPIVVWGKQAENTANYVGKGSQVGVSGAIHTRS
YEAKDGTRRYVTEIVADEVQFLDSRNAVSRTEPKYTGMNEFDSSNNNAGDINPVEDYDDDITPIDDGDIPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=498178 IRP63_RS14395 WP_013724251.1 2872034..2872489(-) (ssbA) [Clostridium botulinum strain 3859/11]
ATGAATAAAGTTGTTTTAGTTGGAAGATTGACAAAAGATCCAGAACTAAGATTTACACCCGGAACTGGTAAAGCTGTTGC
AACGTTCACTTTAGCTGTTAACAGAAGGTTTAAAAGCCCAGGACAACCAGAAGCTGATTTTTTACCTATAGTAGTATGGG
GAAAACAAGCTGAGAATACAGCCAACTATGTTGGCAAAGGTAGTCAGGTTGGAGTAAGTGGTGCAATACATACTAGAAGT
TATGAGGCTAAAGATGGAACTAGAAGATACGTTACAGAAATTGTAGCGGATGAGGTGCAATTCTTAGATTCAAGAAATGC
TGTCTCAAGAACAGAGCCAAAATATACAGGAATGAACGAATTTGATTCATCAAATAATAATGCTGGAGATATAAATCCAG
TTGAAGATTATGATGATGATATCACTCCAATAGATGATGGAGATATACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A0I8A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.509

100

0.51
  ssb Latilactobacillus sakei subsp. sakei 23K

48.438

84.768

0.411
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.194

68.212

0.411
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.397

100

0.404
  ssbB/cilA Streptococcus pneumoniae Rx1

39.735

100

0.397
  ssbB/cilA Streptococcus pneumoniae D39

39.735

100

0.397
  ssbB/cilA Streptococcus pneumoniae R6

39.735

100

0.397
  ssbB/cilA Streptococcus mitis SK321

39.735

100

0.397
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.238

69.536

0.384