Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HK74_RS07575 Genome accession   NC_021834
Coordinates   1443371..1443754 (+) Length   127 a.a.
NCBI ID   WP_020837017.1    Uniprot ID   -
Organism   Campylobacter jejuni 32488     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1438371..1448754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK74_RS07555 (M635_07505) - 1438450..1440384 (-) 1935 WP_002870085.1 ribonuclease R family protein -
  HK74_RS07560 (M635_07510) ilvC 1440503..1441525 (+) 1023 WP_002870086.1 ketol-acid reductoisomerase -
  HK74_RS07565 (M635_07515) - 1441529..1442611 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  HK74_RS07570 (M635_07520) dprA 1442601..1443374 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  HK74_RS07575 (M635_07525) dprB 1443371..1443754 (+) 384 WP_020837017.1 Holliday junction resolvase RuvX Machinery gene
  HK74_RS07580 (M635_07530) - 1443783..1444622 (+) 840 WP_079263627.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  HK74_RS07585 (M635_07535) msrA 1444798..1445295 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  HK74_RS07590 (M635_07540) ppa 1445336..1445854 (-) 519 WP_002855031.1 inorganic diphosphatase -
  HK74_RS07595 (M635_07545) adk 1445864..1446442 (-) 579 WP_002855137.1 adenylate kinase -
  HK74_RS07600 (M635_07550) aspS 1446439..1448190 (-) 1752 WP_002870092.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14157.70 Da        Isoelectric Point: 9.5433

>NTDB_id=49770 HK74_RS07575 WP_020837017.1 1443371..1443754(+) (dprB) [Campylobacter jejuni 32488]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLAAFIMIKNYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=49770 HK74_RS07575 WP_020837017.1 1443371..1443754(+) (dprB) [Campylobacter jejuni 32488]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGTATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
GAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGAATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449

Multiple sequence alignment