Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   SSUD12_RS00790 Genome accession   NC_017621
Coordinates   127767..128060 (+) Length   97 a.a.
NCBI ID   WP_024410167.1    Uniprot ID   -
Organism   Streptococcus suis D12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 122767..133060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD12_RS00760 (SSUD12_0121) - 123789..124154 (+) 366 WP_014637310.1 DUF1033 family protein -
  SSUD12_RS00765 (SSUD12_0122) - 124189..125139 (-) 951 WP_014637311.1 S66 peptidase family protein -
  SSUD12_RS00770 (SSUD12_0123) comYA 125225..126175 (+) 951 WP_014637312.1 competence type IV pilus ATPase ComGA Machinery gene
  SSUD12_RS00775 (SSUD12_0124) comYB 126087..127124 (+) 1038 WP_044669087.1 competence type IV pilus assembly protein ComGB Machinery gene
  SSUD12_RS00780 (SSUD12_0125) comYC 127126..127407 (+) 282 WP_002936550.1 competence type IV pilus major pilin ComGC Machinery gene
  SSUD12_RS00785 (SSUD12_0126) comGD 127388..127795 (+) 408 WP_014637314.1 competence type IV pilus minor pilin ComGD -
  SSUD12_RS00790 (SSUD12_0127) comYE 127767..128060 (+) 294 WP_024410167.1 competence type IV pilus minor pilin ComGE Machinery gene
  SSUD12_RS00795 (SSUD12_0128) comGF/cglF 128047..128481 (+) 435 WP_014637316.1 competence type IV pilus minor pilin ComGF Machinery gene
  SSUD12_RS00800 (SSUD12_0129) comGG 128459..128869 (+) 411 WP_014637317.1 competence type IV pilus minor pilin ComGG -
  SSUD12_RS00805 (SSUD12_0130) comYH 128926..129879 (+) 954 WP_014637318.1 class I SAM-dependent methyltransferase Machinery gene
  SSUD12_RS00810 (SSUD12_0131) - 129929..131116 (+) 1188 WP_014637319.1 acetate kinase -
  SSUD12_RS00815 (SSUD12_0132) - 131377..131928 (+) 552 WP_014637320.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10788.79 Da        Isoelectric Point: 10.4050

>NTDB_id=49769 SSUD12_RS00790 WP_024410167.1 127767..128060(+) (comYE) [Streptococcus suis D12]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDVGRRRQAWELEQQEVLNLAQMAVQTGQDKLALNGVTVQVQRTAD
KIIVFREGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=49769 SSUD12_RS00790 WP_024410167.1 127767..128060(+) (comYE) [Streptococcus suis D12]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTCTGGTTGCCCTTGCGACTCTAGTGACTAT
TTGCAGCTTGATTTTATCAGCTGTGGATGTAGGTCGTAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGGGCAAGATAAGCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACTGCGGAT
AAGATTATTGTTTTCCGCGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

53.608

100

0.536
  comYE Streptococcus mutans UA159

53.608

100

0.536
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371

Multiple sequence alignment