Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | SSUD12_RS00805 | Genome accession | NC_017621 |
| Coordinates | 128926..129879 (+) | Length | 317 a.a. |
| NCBI ID | WP_014637318.1 | Uniprot ID | G7SD66 |
| Organism | Streptococcus suis D12 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 123926..134879
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SSUD12_RS00765 (SSUD12_0122) | - | 124189..125139 (-) | 951 | WP_014637311.1 | S66 peptidase family protein | - |
| SSUD12_RS00770 (SSUD12_0123) | comYA | 125225..126175 (+) | 951 | WP_014637312.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| SSUD12_RS00775 (SSUD12_0124) | comYB | 126087..127124 (+) | 1038 | WP_044669087.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| SSUD12_RS00780 (SSUD12_0125) | comYC | 127126..127407 (+) | 282 | WP_002936550.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| SSUD12_RS00785 (SSUD12_0126) | comGD | 127388..127795 (+) | 408 | WP_014637314.1 | competence type IV pilus minor pilin ComGD | - |
| SSUD12_RS00790 (SSUD12_0127) | comYE | 127767..128060 (+) | 294 | WP_024410167.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| SSUD12_RS00795 (SSUD12_0128) | comGF/cglF | 128047..128481 (+) | 435 | WP_014637316.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| SSUD12_RS00800 (SSUD12_0129) | comGG | 128459..128869 (+) | 411 | WP_014637317.1 | competence type IV pilus minor pilin ComGG | - |
| SSUD12_RS00805 (SSUD12_0130) | comYH | 128926..129879 (+) | 954 | WP_014637318.1 | class I SAM-dependent methyltransferase | Machinery gene |
| SSUD12_RS00810 (SSUD12_0131) | - | 129929..131116 (+) | 1188 | WP_014637319.1 | acetate kinase | - |
| SSUD12_RS00815 (SSUD12_0132) | - | 131377..131928 (+) | 552 | WP_014637320.1 | folate family ECF transporter S component | - |
| SSUD12_RS00820 (SSUD12_0133) | - | 131984..133240 (+) | 1257 | WP_014637321.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| SSUD12_RS00825 (SSUD12_0134) | pepA | 133286..134347 (-) | 1062 | WP_014637322.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35745.78 Da Isoelectric Point: 4.4003
>NTDB_id=49771 SSUD12_RS00805 WP_014637318.1 128926..129879(+) (comYH) [Streptococcus suis D12]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVANQHETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVANQHETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=49771 SSUD12_RS00805 WP_014637318.1 128926..129879(+) (comYH) [Streptococcus suis D12]
ATGAATTTTGAAAAGATCGAACAGGCTTATGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTAATCAGCATGAGACGGACCTTGTTGTCAATAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGACTATCTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTACTTA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGTTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
ATGAATTTTGAAAAGATCGAACAGGCTTATGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTAATCAGCATGAGACGGACCTTGTTGTCAATAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCCTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGACTATCTGGGGATTGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTTTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGCCCAAATGAACATACCTACGCCCATCATTTACTTA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGTTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.443 |
99.685 |
0.603 |
| comYH | Streptococcus mutans UA159 |
60.127 |
99.685 |
0.599 |