Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KIH30_RS11130 Genome accession   NZ_CP075343
Coordinates   2490209..2490916 (-) Length   235 a.a.
NCBI ID   WP_033276868.1    Uniprot ID   A0ACC6UL44
Organism   Streptomyces sp. EMB24     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2485209..2495916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIH30_RS11115 - 2486693..2487679 (+) 987 WP_268219843.1 hypothetical protein -
  KIH30_RS11120 - 2487717..2488670 (+) 954 WP_199208632.1 hypothetical protein -
  KIH30_RS11125 clpX 2488739..2490025 (-) 1287 WP_019527658.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  KIH30_RS11130 clpP 2490209..2490916 (-) 708 WP_033276868.1 ATP-dependent Clp protease proteolytic subunit Regulator
  KIH30_RS11135 - 2491026..2491631 (-) 606 WP_006133589.1 ATP-dependent Clp protease proteolytic subunit -
  KIH30_RS11140 tig 2491932..2493329 (-) 1398 WP_268219844.1 trigger factor -
  KIH30_RS11155 - 2493876..2495009 (-) 1134 WP_268219845.1 tyrosine-type recombinase/integrase -
  KIH30_RS11160 - 2495009..2495221 (-) 213 WP_086698960.1 excisionase family DNA-binding protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26147.69 Da        Isoelectric Point: 4.6559

>NTDB_id=497657 KIH30_RS11130 WP_033276868.1 2490209..2490916(-) (clpP) [Streptomyces sp. EMB24]
MNAFPGSGIYDRMQAVQDMSGSQGRYTGPQAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQ
LLCLESMDPDRDISVYINSPGGSFTALTAIYDTMQYVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYS
ETGRGQVSDLEIAANEILRMRTQLEDMLAKHSTRPIEKIREDIERDKILTAEDALEYGLIDQIITTRKMDNSSLR

Nucleotide


Download         Length: 708 bp        

>NTDB_id=497657 KIH30_RS11130 WP_033276868.1 2490209..2490916(-) (clpP) [Streptomyces sp. EMB24]
GTGAACGCATTCCCCGGCAGCGGGATCTACGACCGTATGCAGGCCGTGCAGGACATGTCCGGCTCGCAGGGCCGCTACAC
CGGTCCGCAGGCCGAGTCCCGTTACGTCATTCCGCGCTTCGTCGAGCGCACCTCCCAGGGCATCCGCGAGTACGACCCGT
ACGCGAAGCTCTTCGAGGAGCGTGTGATCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAG
CTGCTGTGCCTGGAGTCGATGGACCCCGACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCT
CACCGCGATCTACGACACGATGCAGTACGTGAAGCCGGACATCCAGACCGTGTGCATGGGCCAGGCGGCCTCCGCCGCCG
CCGTCCTGCTCGCCGCCGGCACGCCCGGCAAGCGCATGGCGCTGCCGAACGCCCGGGTGCTGATCCACCAGCCGTACAGC
GAGACCGGCCGCGGTCAGGTCTCCGACCTGGAGATCGCCGCCAACGAGATCCTCCGCATGCGCACGCAGCTGGAGGACAT
GCTGGCCAAGCACTCCACCCGTCCGATCGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACG
CGCTGGAGTACGGCCTGATCGACCAGATCATCACCACCCGGAAGATGGACAACTCCAGCCTGCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(46-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.632

80.851

0.426
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.596

80

0.413
  clpP Lactococcus lactis subsp. cremoris KW2

45.05

85.957

0.387
  clpP Streptococcus mutans UA159

44.39

87.234

0.387
  clpP Streptococcus thermophilus LMD-9

46.154

82.979

0.383
  clpP Streptococcus thermophilus LMG 18311

46.154

82.979

0.383
  clpP Streptococcus pyogenes JRS4

44.776

85.532

0.383
  clpP Streptococcus pyogenes MGAS315

44.776

85.532

0.383
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.059

85.957

0.379
  clpP Streptococcus pneumoniae Rx1

44.388

83.404

0.37
  clpP Streptococcus pneumoniae TIGR4

44.388

83.404

0.37
  clpP Streptococcus pneumoniae D39

44.388

83.404

0.37
  clpP Streptococcus pneumoniae R6

44.388

83.404

0.37