Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   INQ42_RS09840 Genome accession   NZ_CP063657
Coordinates   2176172..2176597 (+) Length   141 a.a.
NCBI ID   WP_194034110.1    Uniprot ID   -
Organism   Novilysobacter avium strain H23M41     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2168194..2181466 2176172..2176597 within 0


Gene organization within MGE regions


Location: 2168194..2181466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ42_RS09820 (INQ42_09820) - 2168194..2168886 (-) 693 WP_194034106.1 M949_RS01915 family surface polysaccharide biosynthesis protein -
  INQ42_RS09825 (INQ42_09825) - 2169825..2172611 (-) 2787 WP_194034107.1 glycoside hydrolase family 19 protein -
  INQ42_RS09830 (INQ42_09830) - 2172644..2175241 (-) 2598 WP_194034108.1 type VI secretion system Vgr family protein -
  INQ42_RS09835 (INQ42_09835) comP 2175636..2176067 (+) 432 WP_194034109.1 pilin Machinery gene
  INQ42_RS09840 (INQ42_09840) comP 2176172..2176597 (+) 426 WP_194034110.1 pilin Machinery gene
  INQ42_RS09845 (INQ42_09845) - 2176676..2178745 (+) 2070 WP_194034111.1 sulfatase-like hydrolase/transferase -
  INQ42_RS09850 (INQ42_09850) - 2178859..2180430 (+) 1572 WP_194034112.1 hypothetical protein -
  INQ42_RS09855 (INQ42_09855) - 2180773..2181075 (+) 303 WP_194034113.1 type II toxin-antitoxin system HigB family toxin -
  INQ42_RS09860 (INQ42_09860) - 2181092..2181466 (+) 375 WP_194034114.1 type II toxin-antitoxin system HigA family antitoxin -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14446.70 Da        Isoelectric Point: 8.8616

>NTDB_id=496150 INQ42_RS09840 WP_194034110.1 2176172..2176597(+) (comP) [Novilysobacter avium strain H23M41]
MKNTRGFTLIELMIVIAIIAILAAIALPAYQDYTIRARVSELAVSASGLKVTVAENIINNGGALPTDACAPVSTAVPTGN
RNTASIACTPATGAIAVTGTTLTRGTILTYTPTTVTSGAIGTSWRCVGSGSQPKFYPAECR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=496150 INQ42_RS09840 WP_194034110.1 2176172..2176597(+) (comP) [Novilysobacter avium strain H23M41]
ATGAAAAACACGCGCGGGTTCACATTGATCGAACTCATGATCGTCATCGCGATCATTGCAATCCTCGCTGCCATCGCTCT
ACCCGCATATCAGGATTACACCATCCGCGCCCGGGTCTCCGAGCTAGCCGTCTCAGCCAGCGGACTCAAGGTAACGGTCG
CCGAAAACATCATCAACAACGGCGGCGCATTGCCCACCGACGCCTGCGCGCCGGTCTCGACCGCTGTTCCGACCGGCAAC
CGCAACACCGCCAGCATCGCCTGCACGCCCGCCACCGGCGCTATCGCAGTCACCGGCACGACGCTCACACGCGGCACCAT
TCTCACCTACACCCCCACTACAGTCACCAGCGGCGCCATTGGTACCTCGTGGCGTTGCGTTGGCAGCGGCAGCCAGCCGA
AGTTTTATCCGGCAGAGTGCCGCTAG

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

46.667

100

0.496
  pilA Ralstonia pseudosolanacearum GMI1000

41.875

100

0.475
  pilA2 Legionella pneumophila str. Paris

48.175

97.163

0.468
  pilA2 Legionella pneumophila strain ERS1305867

47.445

97.163

0.461
  pilA Acinetobacter baumannii strain A118

37.255

100

0.404
  pilA/pilA1 Eikenella corrodens VA1

37.5

100

0.404
  pilA Pseudomonas aeruginosa PAK

35.065

100

0.383
  pilA Haemophilus influenzae 86-028NP

37.226

97.163

0.362