Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   IPU22_RS06730 Genome accession   NZ_CP063367
Coordinates   1414542..1414865 (+) Length   107 a.a.
NCBI ID   WP_212574401.1    Uniprot ID   A0AAQ0IF01
Organism   Staphylococcus delphini strain 2794-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1409542..1419865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPU22_RS06700 (IPU22_06700) - 1410222..1410425 (+) 204 WP_014613816.1 YqgQ family protein -
  IPU22_RS06705 (IPU22_06705) - 1410422..1411408 (+) 987 WP_019165227.1 ROK family glucokinase -
  IPU22_RS06710 (IPU22_06710) - 1411409..1411720 (+) 312 WP_096541463.1 MTH1187 family thiamine-binding protein -
  IPU22_RS06715 (IPU22_06715) - 1411733..1412362 (+) 630 WP_096541460.1 MBL fold metallo-hydrolase -
  IPU22_RS06720 (IPU22_06720) comGA 1412519..1413493 (+) 975 WP_096541457.1 competence type IV pilus ATPase ComGA Machinery gene
  IPU22_RS06725 (IPU22_06725) comGB 1413462..1414529 (+) 1068 WP_212574400.1 competence type IV pilus assembly protein ComGB -
  IPU22_RS06730 (IPU22_06730) comGC 1414542..1414865 (+) 324 WP_212574401.1 competence type IV pilus major pilin ComGC Machinery gene
  IPU22_RS06735 (IPU22_06735) comGD 1414843..1415283 (+) 441 WP_212574402.1 competence type IV pilus minor pilin ComGD -
  IPU22_RS06740 (IPU22_06740) - 1415494..1415979 (+) 486 WP_142302713.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  IPU22_RS06745 (IPU22_06745) - 1416143..1416670 (+) 528 WP_212574403.1 shikimate kinase -
  IPU22_RS06750 (IPU22_06750) gcvT 1416828..1417919 (+) 1092 WP_096605370.1 glycine cleavage system aminomethyltransferase GcvT -
  IPU22_RS06755 (IPU22_06755) gcvPA 1417932..1419281 (+) 1350 WP_212574404.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12017.14 Da        Isoelectric Point: 8.5012

>NTDB_id=494773 IPU22_RS06730 WP_212574401.1 1414542..1414865(+) (comGC) [Staphylococcus delphini strain 2794-1]
MIQQLKSKFNQKKGFTLIEMLLVLLIISVLLILIIPNIAKQSDHIQKTGCAAQLKMVDSQIEAYALKFNHKPNTIDDLVR
EGYIKESQKTCKSSEDITIRDGEAVAS

Nucleotide


Download         Length: 324 bp        

>NTDB_id=494773 IPU22_RS06730 WP_212574401.1 1414542..1414865(+) (comGC) [Staphylococcus delphini strain 2794-1]
ATGATTCAACAACTTAAATCAAAATTTAACCAAAAGAAAGGATTTACTTTAATTGAAATGTTACTTGTGCTGTTAATTAT
TAGTGTGCTATTGATACTCATTATCCCGAATATTGCTAAACAGTCAGATCATATCCAAAAAACCGGCTGTGCTGCACAAT
TAAAAATGGTCGATAGTCAAATAGAAGCCTATGCTTTAAAGTTTAACCACAAACCGAATACGATTGATGATTTAGTTCGT
GAAGGCTACATTAAAGAAAGTCAAAAAACATGCAAATCAAGTGAAGATATCACAATCAGAGATGGCGAAGCAGTTGCGTC
ATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

73.684

88.785

0.654
  comGC Staphylococcus aureus N315

73.684

88.785

0.654
  comYC Streptococcus suis isolate S10

53.947

71.028

0.383
  comGC/cglC Streptococcus mitis SK321

43.478

85.981

0.374
  comGC Bacillus subtilis subsp. subtilis str. 168

43.478

85.981

0.374
  comGC Lactococcus lactis subsp. cremoris KW2

47.561

76.636

0.364
  comGC/cglC Streptococcus pneumoniae D39

42.391

85.981

0.364
  comGC/cglC Streptococcus pneumoniae R6

42.391

85.981

0.364
  comGC/cglC Streptococcus pneumoniae TIGR4

42.391

85.981

0.364
  comGC/cglC Streptococcus pneumoniae Rx1

42.391

85.981

0.364