Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | IPU22_RS06720 | Genome accession | NZ_CP063367 |
| Coordinates | 1412519..1413493 (+) | Length | 324 a.a. |
| NCBI ID | WP_096541457.1 | Uniprot ID | A0AAP8DTL3 |
| Organism | Staphylococcus delphini strain 2794-1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1407519..1418493
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IPU22_RS06685 (IPU22_06685) | rpmG | 1407924..1408073 (+) | 150 | WP_014613813.1 | 50S ribosomal protein L33 | - |
| IPU22_RS06690 (IPU22_06690) | - | 1408223..1408762 (+) | 540 | WP_096541475.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| IPU22_RS06695 (IPU22_06695) | - | 1408781..1410220 (+) | 1440 | WP_212574399.1 | rhomboid family intramembrane serine protease | - |
| IPU22_RS06700 (IPU22_06700) | - | 1410222..1410425 (+) | 204 | WP_014613816.1 | YqgQ family protein | - |
| IPU22_RS06705 (IPU22_06705) | - | 1410422..1411408 (+) | 987 | WP_019165227.1 | ROK family glucokinase | - |
| IPU22_RS06710 (IPU22_06710) | - | 1411409..1411720 (+) | 312 | WP_096541463.1 | MTH1187 family thiamine-binding protein | - |
| IPU22_RS06715 (IPU22_06715) | - | 1411733..1412362 (+) | 630 | WP_096541460.1 | MBL fold metallo-hydrolase | - |
| IPU22_RS06720 (IPU22_06720) | comGA | 1412519..1413493 (+) | 975 | WP_096541457.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| IPU22_RS06725 (IPU22_06725) | comGB | 1413462..1414529 (+) | 1068 | WP_212574400.1 | competence type IV pilus assembly protein ComGB | - |
| IPU22_RS06730 (IPU22_06730) | comGC | 1414542..1414865 (+) | 324 | WP_212574401.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| IPU22_RS06735 (IPU22_06735) | comGD | 1414843..1415283 (+) | 441 | WP_212574402.1 | competence type IV pilus minor pilin ComGD | - |
| IPU22_RS06740 (IPU22_06740) | - | 1415494..1415979 (+) | 486 | WP_142302713.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| IPU22_RS06745 (IPU22_06745) | - | 1416143..1416670 (+) | 528 | WP_212574403.1 | shikimate kinase | - |
| IPU22_RS06750 (IPU22_06750) | gcvT | 1416828..1417919 (+) | 1092 | WP_096605370.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36896.63 Da Isoelectric Point: 7.2459
>NTDB_id=494772 IPU22_RS06720 WP_096541457.1 1412519..1413493(+) (comGA) [Staphylococcus delphini strain 2794-1]
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KELYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKKDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSDKLQLLNKEGVIDEKILR
KYTI
MQLLLDHVIQFALQNEASDIHFIPSQSQVEVKLRVKDQLVLYDTLNLETYQKLLTLLKYQAGLDISTRHKAQSGRYIYEH
KELYYLRVSTLPLNLGTESCVIRITPQYFQNAKAHSVLDIKSNMEKKQGLILFSGPTGAGKSTLMYQMVVYAKQKLNLNI
ITIEDPVEQLVNGITQISVNEKADITYGSSLKAILRCDPDVILIGEIRDSHIARDVIQASLSGHLVLSTIHANDCQGVLL
RLIEMGLSHQDLSQSINLIINQRLITTKKDQRQLVYETMDQQEIHYFLNNNFQLPTAFTSLSDKLQLLNKEGVIDEKILR
KYTI
Nucleotide
Download Length: 975 bp
>NTDB_id=494772 IPU22_RS06720 WP_096541457.1 1412519..1413493(+) (comGA) [Staphylococcus delphini strain 2794-1]
ATGCAACTACTATTAGATCATGTCATACAATTTGCACTTCAAAATGAGGCATCGGACATTCATTTCATCCCTTCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATATCAAGCCGGATTAGATATTTCGACACGCCACAAAGCACAAAGTGGGCGCTATATTTATGAACAT
AAAGAGTTATATTATTTAAGAGTGTCCACATTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCCCACAGCGTTTTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAAAGTACGTTAATGTATCAAATGGTCGTCTACGCTAAACAAAAGTTAAACTTGAATATC
ATCACGATAGAAGACCCCGTGGAGCAGCTTGTCAACGGTATTACACAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGGTCATCGTTAAAAGCAATCCTTCGTTGTGATCCAGATGTTATCTTAATTGGTGAAATTCGTGACAGCCATATTGCAA
GGGACGTGATACAAGCGAGTTTAAGCGGACATTTAGTATTGTCGACGATACACGCCAACGATTGTCAAGGGGTGCTCCTG
AGACTGATTGAAATGGGACTCTCTCACCAAGATCTATCTCAATCCATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAAAGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCACTACTTTTTGAATAATAACTTTCAAC
TACCTACTGCTTTCACAAGCCTTTCTGATAAGCTTCAACTTCTGAATAAAGAAGGGGTTATAGATGAAAAGATTTTACGA
AAATATACGATTTAA
ATGCAACTACTATTAGATCATGTCATACAATTTGCACTTCAAAATGAGGCATCGGACATTCATTTCATCCCTTCACAATC
ACAAGTCGAAGTGAAACTCAGAGTGAAAGATCAACTTGTATTATATGACACATTAAATCTAGAAACGTATCAAAAATTGT
TAACTTTGTTGAAATATCAAGCCGGATTAGATATTTCGACACGCCACAAAGCACAAAGTGGGCGCTATATTTATGAACAT
AAAGAGTTATATTATTTAAGAGTGTCCACATTACCTTTAAACTTAGGTACTGAAAGTTGTGTTATTCGTATTACACCCCA
ATATTTTCAAAATGCGAAAGCCCACAGCGTTTTAGACATCAAATCTAATATGGAGAAAAAGCAAGGTTTAATTCTGTTTA
GCGGGCCTACAGGTGCAGGAAAAAGTACGTTAATGTATCAAATGGTCGTCTACGCTAAACAAAAGTTAAACTTGAATATC
ATCACGATAGAAGACCCCGTGGAGCAGCTTGTCAACGGTATTACACAAATTTCCGTTAACGAAAAAGCTGATATTACGTA
TGGGTCATCGTTAAAAGCAATCCTTCGTTGTGATCCAGATGTTATCTTAATTGGTGAAATTCGTGACAGCCATATTGCAA
GGGACGTGATACAAGCGAGTTTAAGCGGACATTTAGTATTGTCGACGATACACGCCAACGATTGTCAAGGGGTGCTCCTG
AGACTGATTGAAATGGGACTCTCTCACCAAGATCTATCTCAATCCATCAATCTCATCATCAATCAAAGACTCATTACAAC
AAAAAAAGACCAGCGACAACTCGTCTATGAAACGATGGATCAACAGGAGATTCACTACTTTTTGAATAATAACTTTCAAC
TACCTACTGCTTTCACAAGCCTTTCTGATAAGCTTCAACTTCTGAATAAAGAAGGGGTTATAGATGAAAAGATTTTACGA
AAATATACGATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
59.133 |
99.691 |
0.59 |
| comGA | Staphylococcus aureus N315 |
59.133 |
99.691 |
0.59 |