Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IM816_RS04685 Genome accession   NZ_CP063231
Coordinates   1082495..1083760 (-) Length   421 a.a.
NCBI ID   WP_250339970.1    Uniprot ID   -
Organism   Luteibacter flocculans strain EIF3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1077495..1088760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IM816_RS04660 (IM816_04665) msrA 1077514..1078188 (-) 675 WP_250339966.1 peptide-methionine (S)-S-oxide reductase MsrA -
  IM816_RS04665 (IM816_04670) - 1078483..1079685 (+) 1203 WP_250339967.1 HD-GYP domain-containing protein -
  IM816_RS04670 (IM816_04675) - 1079682..1080932 (+) 1251 WP_072322917.1 bifunctional diguanylate cyclase/phosphodiesterase -
  IM816_RS04675 (IM816_04680) coaE 1080945..1081550 (-) 606 WP_250339968.1 dephospho-CoA kinase -
  IM816_RS04680 (IM816_04685) - 1081547..1082416 (-) 870 WP_250339969.1 A24 family peptidase -
  IM816_RS04685 (IM816_04690) pilC 1082495..1083760 (-) 1266 WP_250339970.1 type II secretion system F family protein Machinery gene
  IM816_RS04690 (IM816_04695) pilB 1083895..1085622 (-) 1728 WP_250339971.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IM816_RS04695 (IM816_04700) - 1085805..1087202 (+) 1398 WP_250339972.1 MBOAT family O-acyltransferase -
  IM816_RS04700 (IM816_04705) - 1087171..1088346 (+) 1176 WP_250339973.1 hypothetical protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45817.79 Da        Isoelectric Point: 10.0673

>NTDB_id=493971 IM816_RS04685 WP_250339970.1 1082495..1083760(-) (pilC) [Luteibacter flocculans strain EIF3]
MAVATANKTSRALGAARSEVNKLTMYDWTALDKRGKRMTGEMQAKNASLVKAELRRQGMNPQTVRERAKPLFGGSGSTVK
PRDVAIFSRQIATMMASGVPMVQAFDIIANGQKNVRFKNMLLDVKSNIEGGASLHEALGQYPVQFDELYRNLVHAGESAG
VLDTILDTVATYKERVEGIKSKIKKALFYPAMVLVVALLVTMILLLFVVPVFQQTFRDAGAELPVPTMVVVKASEFMQSY
WWLVIAVIAGTGVALVMAKKRSAKFAHFLDRASLRIPVIGNILRQSALARFARTLGVTFQAGVPLVEALEAVSGATGSIV
YGEAVMKMRDDVSVGHQLQLAMRQTNLFPNMVVQMTAIGEESGSLDSMLFKVAEFYEEEVNNAVDTLSSLLEPFIMVILG
GLVGGMVISLYLPIFKIAGTT

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=493971 IM816_RS04685 WP_250339970.1 1082495..1083760(-) (pilC) [Luteibacter flocculans strain EIF3]
ATGGCAGTAGCCACCGCCAACAAGACCTCGCGCGCGCTCGGCGCCGCCAGGTCCGAGGTCAACAAGCTGACGATGTACGA
CTGGACCGCGCTCGATAAGCGCGGCAAGCGTATGACGGGCGAGATGCAGGCCAAGAACGCATCTCTGGTCAAGGCGGAAC
TGCGCCGCCAGGGCATGAATCCGCAGACGGTCCGTGAGCGTGCCAAGCCGTTGTTCGGTGGCTCCGGCAGCACGGTCAAG
CCGCGCGATGTCGCCATCTTCAGCCGCCAGATCGCCACCATGATGGCGTCCGGCGTGCCCATGGTGCAGGCCTTCGACAT
CATCGCGAACGGCCAGAAGAATGTCCGCTTCAAGAACATGCTTCTGGACGTCAAGTCCAACATCGAAGGCGGCGCATCCC
TTCACGAGGCGCTTGGGCAGTACCCCGTCCAATTCGACGAGCTGTATCGAAACCTCGTACATGCCGGTGAGTCTGCCGGT
GTGCTGGACACCATCCTGGACACCGTCGCGACCTACAAGGAGCGCGTCGAGGGTATCAAGTCGAAGATCAAGAAGGCGCT
GTTCTATCCCGCCATGGTCCTCGTCGTGGCCCTTCTGGTCACCATGATCCTGCTCCTCTTCGTCGTGCCGGTCTTCCAGC
AGACGTTCCGTGACGCGGGCGCCGAGTTGCCGGTCCCCACGATGGTCGTGGTCAAGGCATCGGAATTCATGCAGAGCTAC
TGGTGGCTCGTCATTGCGGTGATCGCAGGAACGGGCGTCGCCCTGGTCATGGCGAAGAAGCGCTCGGCGAAGTTTGCCCA
TTTCCTCGATCGGGCGTCGCTGAGGATTCCGGTGATCGGCAATATCCTTCGGCAGTCGGCACTGGCTCGCTTTGCCCGCA
CGCTCGGCGTCACCTTCCAGGCGGGTGTGCCACTGGTCGAAGCGCTGGAGGCGGTATCGGGCGCCACGGGCAGCATCGTC
TACGGTGAAGCGGTCATGAAGATGCGCGACGACGTATCGGTCGGTCACCAGTTACAGCTGGCGATGCGCCAGACCAACCT
GTTTCCGAACATGGTGGTGCAGATGACCGCCATCGGCGAAGAATCCGGCTCCCTGGACTCGATGCTGTTCAAGGTCGCCG
AGTTCTACGAGGAAGAGGTCAACAACGCAGTCGATACGCTGAGCAGCCTGCTCGAACCCTTCATCATGGTCATCCTCGGT
GGATTGGTGGGCGGCATGGTCATCTCGCTTTACCTGCCCATCTTCAAGATCGCCGGCACGACCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.671

93.824

0.504
  pilC Pseudomonas stutzeri DSM 10701

51.263

94.062

0.482
  pilC Acinetobacter baylyi ADP1

48.768

96.437

0.47
  pilC Acinetobacter baumannii D1279779

50.127

93.349

0.468
  pilG Neisseria gonorrhoeae MS11

40.731

90.974

0.371
  pilG Neisseria meningitidis 44/76-A

40.576

90.736

0.368
  pilC Vibrio campbellii strain DS40M4

38

95.012

0.361