Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IMY50_RS18795 Genome accession   NZ_CP063158
Coordinates   3724082..3725320 (-) Length   412 a.a.
NCBI ID   WP_071713497.1    Uniprot ID   -
Organism   Bacillus cereus strain CF4-51     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3719082..3730320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMY50_RS18775 (IMY50_18770) spoVS 3719491..3719751 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  IMY50_RS18780 (IMY50_18775) - 3719901..3720695 (-) 795 WP_001221097.1 TIGR00282 family metallophosphoesterase -
  IMY50_RS18785 (IMY50_18780) rny 3720858..3722423 (-) 1566 WP_000099769.1 ribonuclease Y -
  IMY50_RS18790 (IMY50_18785) recA 3722906..3723937 (-) 1032 WP_001283854.1 recombinase RecA Machinery gene
  IMY50_RS18795 (IMY50_18790) cinA 3724082..3725320 (-) 1239 WP_071713497.1 competence/damage-inducible protein A Machinery gene
  IMY50_RS18800 (IMY50_18795) pgsA 3725341..3725919 (-) 579 WP_001052977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IMY50_RS18805 (IMY50_18800) - 3725983..3726894 (-) 912 WP_000137474.1 helix-turn-helix domain-containing protein -
  IMY50_RS18810 (IMY50_18805) - 3726916..3727701 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  IMY50_RS18815 (IMY50_18810) - 3727840..3728088 (-) 249 WP_000114444.1 DUF3243 domain-containing protein -
  IMY50_RS18820 (IMY50_18815) - 3728164..3728877 (-) 714 WP_071713498.1 SDR family oxidoreductase -
  IMY50_RS18825 (IMY50_18820) - 3728978..3730264 (-) 1287 WP_000411277.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45423.78 Da        Isoelectric Point: 5.8792

>NTDB_id=493639 IMY50_RS18795 WP_071713497.1 3724082..3725320(-) (cinA) [Bacillus cereus strain CF4-51]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IATSLDEKLVYDEKALDLISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDLLKADIGISFTGVAGPGASEQKEPGTVFVGLAIKGEQTAVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=493639 IMY50_RS18795 WP_071713497.1 3724082..3725320(-) (cinA) [Bacillus cereus strain CF4-51]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTGGCTTCAATTGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATCCTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCGACTAGTTTAGATGAAAAGCTTGTGTATGATGAAAAGGCATTAGACTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCACGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGCTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAATGCTGGTG
TTTCTTCTGTATTTAAGGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAGGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGGTGCTTCAGAACAGAAAGAGCCAGGAACAGTATTTGTTGGATTAGCGA
TTAAAGGTGAACAAACTGCAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGATCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.049

99.515

0.578
  cinA Streptococcus pneumoniae TIGR4

46.539

100

0.473
  cinA Streptococcus mitis SK321

46.301

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.062

100

0.468
  cinA Streptococcus pneumoniae R6

46.062

100

0.468
  cinA Streptococcus pneumoniae D39

45.823

100

0.466
  cinA Streptococcus mitis NCTC 12261

45.585

100

0.464
  cinA Streptococcus mutans UA159

45.074

98.544

0.444
  cinA Streptococcus suis isolate S10

40.584

91.505

0.371