Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IL982_RS14075 Genome accession   NZ_CP063049
Coordinates   2993629..2995356 (+) Length   575 a.a.
NCBI ID   WP_414477573.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain KC-Dl-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2988629..3000356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL982_RS14055 (IL982_14055) pilM 2990858..2991856 (+) 999 WP_086367615.1 type IV pilus biogenesis protein PilM -
  IL982_RS14060 (IL982_14060) - 2991853..2992494 (+) 642 WP_086367614.1 PilN domain-containing protein -
  IL982_RS14065 (IL982_14065) - 2992491..2993081 (+) 591 WP_086367613.1 type 4a pilus biogenesis protein PilO -
  IL982_RS14070 (IL982_14070) - 2993087..2993605 (+) 519 WP_232092150.1 pilus assembly protein PilP -
  IL982_RS14075 (IL982_14075) pilQ 2993629..2995356 (+) 1728 WP_414477573.1 type IV pilus secretin PilQ Machinery gene
  IL982_RS14080 (IL982_14080) aroK 2995686..2996204 (+) 519 WP_086367859.1 shikimate kinase AroK -
  IL982_RS14085 (IL982_14085) aroB 2996234..2997313 (+) 1080 WP_086367612.1 3-dehydroquinate synthase -
  IL982_RS14090 (IL982_14090) - 2997328..2998839 (+) 1512 WP_086367611.1 SPOR domain-containing protein -
  IL982_RS14095 (IL982_14095) dam 2998947..2999789 (+) 843 WP_086367610.1 adenine-specific DNA-methyltransferase -
  IL982_RS14100 (IL982_14100) - 2999773..2999970 (-) 198 WP_197573549.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62738.23 Da        Isoelectric Point: 4.9057

>NTDB_id=492575 IL982_RS14075 WP_414477573.1 2993629..2995356(+) (pilQ) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
MKRMLSVSLGWQRCWVVMLCCWLGLSQAAIAAGMNIVNNQITDLDFKRDNRGRGVLTVQLAKPQSLVDMRRSGKQLHIDI
FDTAIKDDMLYVLDVVDFATVVRSIETFRTEKGSKLILNMAGVFDYDYQLKGSRLEVVLNAQKKKASSTAKAKQGKIDYK
GKPISINFQDVPVRNVLQLVAEYNDFNLVVSDTVQGNVTLRLDDVPWPQVLDIILQSKGLDKRVQGSVVLIAPKSELATN
ERQEMEAKRKEEELASLRSELIQINYAKAGDIADLLLGTKDGVSMLSQRGSLHVDERTNAIIIKDIPESIDSIEEIITAL
DIPVKQVQIEARIVTVDEGDIDELGVRWGVVNQNGSTTIGGSIEGNLASSGLLGDDATVDDFLNVNLGAITPGASSIAFQ
VAKLGDILLDLELSALQAESKAEIISSPRLVTTNKKAAYIEQGTEIPYLEAASSGAVSVDFKKAVLSLMVTPQITPDDKL
VLDLLVTQDKVGETVVTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIYQHQVNNSVRKVPLLGDIPGLGVLFRHKLQEMG
KRELLIFVTPKIITQ

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=492575 IL982_RS14075 WP_414477573.1 2993629..2995356(+) (pilQ) [Photobacterium damselae subsp. damselae strain KC-Dl-1]
ATGAAAAGGATGTTATCGGTCAGCTTGGGTTGGCAACGTTGTTGGGTAGTTATGTTGTGCTGTTGGCTTGGTCTCTCCCA
AGCTGCCATTGCTGCTGGCATGAATATTGTGAATAACCAAATCACCGACTTAGATTTTAAGCGTGATAACCGTGGACGAG
GCGTGCTCACTGTTCAGTTAGCCAAACCTCAATCTTTGGTTGATATGCGCCGTTCAGGGAAGCAATTACACATCGATATC
TTTGATACCGCGATTAAAGATGACATGTTGTATGTACTCGATGTGGTCGACTTTGCAACGGTTGTTCGTTCGATTGAAAC
ATTTCGCACCGAGAAAGGCAGTAAGCTTATTCTCAATATGGCTGGCGTGTTTGACTATGATTACCAATTAAAAGGCTCTC
GTCTTGAAGTTGTTTTGAACGCCCAGAAAAAGAAAGCCAGCAGTACAGCCAAGGCTAAGCAAGGCAAAATTGATTATAAA
GGTAAGCCCATCTCCATTAACTTCCAAGATGTTCCTGTGCGTAACGTATTGCAGTTGGTTGCCGAATATAATGATTTTAA
TCTCGTGGTTTCCGATACTGTGCAGGGTAATGTGACCTTACGTCTTGATGATGTGCCTTGGCCACAAGTGCTTGATATTA
TTTTGCAATCAAAAGGGTTGGATAAACGAGTTCAAGGTTCTGTGGTACTGATTGCGCCAAAATCTGAGTTGGCAACCAAT
GAGCGTCAAGAGATGGAAGCCAAACGTAAAGAAGAGGAGTTAGCTTCGCTTCGTTCGGAGCTGATTCAAATTAATTACGC
TAAAGCAGGAGATATCGCAGACCTTTTACTCGGAACGAAAGATGGAGTCAGTATGTTATCTCAACGCGGGTCTTTGCATG
TTGATGAGCGTACTAATGCCATTATCATCAAAGATATCCCTGAGAGTATTGATAGCATTGAAGAGATTATCACGGCACTA
GATATTCCCGTTAAACAGGTTCAGATAGAAGCTCGTATTGTTACTGTTGATGAAGGGGATATTGACGAGTTAGGGGTACG
TTGGGGTGTCGTTAATCAAAACGGTAGTACAACCATTGGGGGCTCAATTGAAGGTAACCTGGCCAGTTCGGGCTTATTGG
GTGATGACGCGACTGTTGATGATTTCTTAAATGTAAATTTAGGAGCCATTACTCCAGGGGCATCGAGTATTGCATTTCAG
GTGGCAAAACTGGGCGATATTTTGCTCGATCTTGAATTATCCGCTCTACAGGCAGAATCAAAAGCAGAGATTATTTCTAG
TCCTCGATTAGTGACTACCAATAAAAAAGCGGCCTACATCGAACAAGGCACTGAGATCCCTTATTTAGAAGCGGCGTCCA
GTGGTGCGGTATCGGTAGACTTTAAAAAGGCCGTATTGAGTTTGATGGTCACACCACAAATTACCCCAGATGATAAATTG
GTGCTCGATCTGCTGGTCACGCAAGATAAAGTAGGGGAAACAGTTGTGACCGGAACCGGAGAAGCGGTCGCTATTGATAC
TCAACGAATTGGCACGCAAGTTCTGGTTAATAACGGCGAGACTGTGGTCTTAGGTGGTATCTACCAGCATCAGGTGAATA
ATTCTGTCCGTAAAGTCCCTTTGTTGGGTGATATTCCAGGATTGGGCGTATTGTTCCGTCATAAGCTGCAAGAGATGGGC
AAGCGTGAACTGTTGATTTTCGTCACACCAAAAATTATCACCCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(186-234)

Bacterial type II/III secretion system short domain (Secretin_N)

(260-326)

Bacterial type II and III secretion system protein (Secretin)

(415-573)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

61.471

99.304

0.61
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

61.471

99.304

0.61
  pilQ Vibrio campbellii strain DS40M4

61.111

97.043

0.593
  pilQ Legionella pneumophila strain Lp02

43.015

94.609

0.407
  pilQ Legionella pneumophila strain ERS1305867

43.015

94.609

0.407
  pilQ Pseudomonas aeruginosa PAK

41.103

97.739

0.402
  comQ Acinetobacter baylyi ADP1

40.212

98.609

0.397
  pilQ Acinetobacter baumannii D1279779

39.138

100

0.395
  pilQ Acinetobacter baumannii strain A118

39.138

100

0.395