Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IL989_RS08285 Genome accession   NZ_CP062984
Coordinates   1668356..1669606 (+) Length   416 a.a.
NCBI ID   WP_193351798.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1663356..1674606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS08255 (IL989_08255) yfmH 1663452..1664738 (+) 1287 WP_065521269.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  IL989_RS08260 (IL989_08260) ymfI 1664797..1665525 (+) 729 WP_088613854.1 elongation factor P 5-aminopentanone reductase -
  IL989_RS08265 (IL989_08265) - 1665601..1665858 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  IL989_RS08270 (IL989_08270) - 1665986..1666777 (+) 792 WP_013352314.1 YmfK family protein -
  IL989_RS08275 (IL989_08275) - 1666796..1667683 (+) 888 WP_071346793.1 RodZ domain-containing protein -
  IL989_RS08280 (IL989_08280) pgsA 1667757..1668338 (+) 582 WP_013352316.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IL989_RS08285 (IL989_08285) cinA 1668356..1669606 (+) 1251 WP_193351798.1 competence/damage-inducible protein A Machinery gene
  IL989_RS08290 (IL989_08290) recA 1669778..1670821 (+) 1044 WP_013352318.1 recombinase RecA Machinery gene
  IL989_RS08295 (IL989_08295) - 1670987..1672168 (+) 1182 WP_013352319.1 serine hydrolase -
  IL989_RS08300 (IL989_08300) rny 1672459..1674018 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45042.39 Da        Isoelectric Point: 4.9138

>NTDB_id=492246 IL989_RS08285 WP_193351798.1 1668356..1669606(+) (cinA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRLIEEYFAKTKRIMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHDSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQNVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGLVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=492246 IL989_RS08285 WP_193351798.1 1668356..1669606(+) (cinA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGGAAATAGCAAAAAAAGCGGAAATCATTGCAGTCGGCTCAGAGCTTCTGCTCGGCCAGATCGCCAATACGAATGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGCGTAAATGTGTTTTATCACACCGCTGTCGGAGACAATCCGGAACGGCTTA
AGCAAGTCATCCGCATTGCGGAAGAGCGCTCAGACCTGATTATTTTTTCCGGCGGCCTCGGACCGACCAAGGACGATTTA
ACAAAAGAAACCATTGCAAACACTTTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTTGATTGAAGAGTATTT
CGCGAAAACAAAACGGATAATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAAGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGACTCAAGACTTTATATGCTGCTCCCTGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCAAATGAGAAGATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCGCAGCTTGAAGCTGACTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCCGACGGCGAGGTTACGCTGCGTTTAACGGCAAAACATGCCGACGAAAAAGAAACAGAGCGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTGGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCGCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATCACGATTTCCTCTGCCGAAAGCTTTACCGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGCGCGTCTCAACTATTTGCGGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAAAATGTGCTCGGC
GTGAAAGCTGAAACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGCGCGAAAGAGCTTGCCGCCGGTGTAAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGTGTTGCGGGCCCCGATCCGCAGGAAGGGCATGCCCCGGGCCTCGTCT
TTATCGGTATTTCCGCGGAAGGCAAAGAAGAGGTTCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTTATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

48.086

100

0.483
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.129

100

0.474
  cinA Streptococcus pneumoniae Rx1

47.129

100

0.474
  cinA Streptococcus pneumoniae R6

47.129

100

0.474
  cinA Streptococcus pneumoniae D39

46.89

100

0.471
  cinA Streptococcus mutans UA159

46.731

99.279

0.464
  cinA Streptococcus suis isolate S10

40.665

93.99

0.382