Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LPB04_RS00970 Genome accession   NZ_CP062941
Coordinates   242924..244159 (+) Length   411 a.a.
NCBI ID   WP_193688810.1    Uniprot ID   A0A7L9UAC5
Organism   Massilia litorea strain LPB0304     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 237924..249159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB04_RS00950 (LPB04_00950) puuE 238830..239801 (-) 972 WP_193686960.1 allantoinase PuuE -
  LPB04_RS00955 (LPB04_00955) uraH 239911..240264 (+) 354 WP_193686961.1 hydroxyisourate hydrolase -
  LPB04_RS00960 (LPB04_00960) - 240334..240891 (+) 558 WP_193686962.1 ClpP family protease -
  LPB04_RS00965 (LPB04_00965) pilB 241230..242915 (+) 1686 WP_227496573.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LPB04_RS00970 (LPB04_00970) pilC 242924..244159 (+) 1236 WP_193688810.1 type II secretion system F family protein Machinery gene
  LPB04_RS00975 (LPB04_00975) - 244228..244926 (+) 699 WP_193686964.1 hypothetical protein -
  LPB04_RS00980 (LPB04_00980) - 244990..246168 (-) 1179 WP_193686965.1 pyridoxal phosphate-dependent aminotransferase -
  LPB04_RS00985 (LPB04_00985) pilD 246387..247250 (+) 864 WP_193686966.1 A24 family peptidase Machinery gene
  LPB04_RS00990 (LPB04_00990) coaE 247254..247901 (+) 648 WP_193686967.1 dephospho-CoA kinase -
  LPB04_RS00995 (LPB04_00995) zapD 247966..248721 (+) 756 WP_193686968.1 cell division protein ZapD -
  LPB04_RS01000 (LPB04_01000) - 248739..248927 (+) 189 WP_193686969.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45011.11 Da        Isoelectric Point: 10.0962

>NTDB_id=492029 LPB04_RS00970 WP_193688810.1 242924..244159(+) (pilC) [Massilia litorea strain LPB0304]
MAQSLTTRSRGGAQVKEAVYAWEGKDKAGKTVRGELRAGGEAIVNVTLRRQGIMVTKVKKRVYRSGKKITDKDLTMFTRQ
LATMMKAGVPLLQAFDIVGKGHANPSMAKLILDIRADIETGTSLNNAFRKYPRYFDPLFCNLVGAGEQAGILEDLLHRLA
VYKEKTLALKSKIKSALTYPIAILAVAFIVVAVIMIWVVPAFKSVFQSFGADLPAPTLIVMGMSEFFVEWWYLIFGSIFG
SVYFFFQSWRRSLKMQQAMDRLLLRIPIFGDVIRKATIARWTRTLATMFAAGVPLVEALDSVGGASGNAVYLDATRRIQT
EVSTGTSLTMAMQNVNVFPSLVTQMVAIGEESGALDGMLGKVADFFEDEVDEAVAALSSLMEPMIMVILGTLIGGLVVAM
YLPIFKLGSVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=492029 LPB04_RS00970 WP_193688810.1 242924..244159(+) (pilC) [Massilia litorea strain LPB0304]
ATGGCTCAATCCCTCACCACCCGAAGCCGCGGCGGCGCGCAAGTCAAGGAAGCGGTCTACGCCTGGGAAGGCAAGGACAA
GGCCGGCAAGACCGTGCGCGGCGAGCTGCGCGCCGGCGGCGAGGCGATCGTCAACGTGACGCTGCGCCGCCAGGGCATCA
TGGTCACCAAGGTCAAGAAGCGGGTCTACCGCAGCGGCAAGAAGATCACCGACAAGGACCTGACCATGTTCACGCGCCAG
CTGGCGACGATGATGAAGGCCGGCGTGCCGCTCCTGCAGGCCTTCGACATCGTCGGCAAGGGCCATGCGAATCCCTCGAT
GGCGAAACTGATCCTCGACATCCGCGCCGACATCGAGACCGGCACCAGCCTGAACAACGCCTTCCGCAAGTACCCACGCT
ATTTCGACCCGCTGTTCTGCAACCTGGTCGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGCACCGCCTGGCC
GTCTACAAGGAAAAGACGCTGGCCCTGAAGTCCAAGATCAAGTCCGCCCTCACCTACCCGATCGCCATTCTCGCGGTCGC
CTTCATCGTGGTCGCCGTGATCATGATCTGGGTGGTGCCGGCCTTCAAATCCGTGTTCCAGAGCTTCGGCGCCGACCTGC
CCGCGCCGACCCTGATCGTGATGGGAATGTCCGAATTCTTCGTCGAATGGTGGTACCTGATCTTCGGCTCGATCTTCGGC
TCGGTCTACTTCTTCTTCCAGTCCTGGCGCCGCTCGCTGAAAATGCAACAGGCCATGGACCGCCTGCTGCTGCGCATCCC
GATCTTCGGCGACGTGATCCGCAAGGCGACCATCGCGCGCTGGACGCGCACCCTGGCGACCATGTTCGCGGCCGGCGTGC
CGCTGGTCGAAGCCCTCGACTCGGTCGGCGGCGCCTCGGGCAACGCGGTCTACCTCGATGCCACCCGCCGCATCCAGACC
GAAGTCTCCACCGGCACCAGCCTGACGATGGCGATGCAGAACGTGAACGTGTTCCCGAGCCTGGTGACGCAGATGGTCGC
CATCGGCGAAGAATCGGGCGCGCTGGACGGCATGCTCGGTAAAGTCGCGGACTTCTTCGAGGACGAGGTCGACGAAGCCG
TCGCCGCCCTGTCCTCGCTGATGGAGCCAATGATCATGGTCATCCTGGGTACGCTGATCGGCGGGCTGGTGGTGGCGATG
TATCTGCCGATCTTCAAACTCGGTTCGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L9UAC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.303

96.35

0.533
  pilC Pseudomonas stutzeri DSM 10701

54.25

97.324

0.528
  pilG Neisseria gonorrhoeae MS11

52.393

96.594

0.506
  pilG Neisseria meningitidis 44/76-A

52.141

96.594

0.504
  pilC Acinetobacter baylyi ADP1

51.759

96.837

0.501
  pilC Acinetobacter baumannii D1279779

51.889

96.594

0.501
  pilC Vibrio campbellii strain DS40M4

40.602

97.08

0.394
  pilC Vibrio cholerae strain A1552

40.806

96.594

0.394
  pilC Thermus thermophilus HB27

35.904

100

0.363