NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	KE639_RS12520	Genome accession	NZ_CP074111
Coordinates	2684700..2685305 (-)	Length	201 a.a.
NCBI ID	WP_051005918.1	Uniprot ID	A0ABW8BH27
Organism	Streptomyces sp. V17-9
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2679700..2690305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KE639_RS12505 (KE639_02496)	-	2681423..2682391 (+)	969	WP_102927979.1	hypothetical protein	-
KE639_RS12510 (KE639_02497)	clpX	2682457..2683743 (-)	1287	WP_061444769.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
KE639_RS12515 (KE639_02498)	clpP	2683936..2684649 (-)	714	WP_102927978.1	ATP-dependent Clp protease proteolytic subunit	Regulator
KE639_RS12520 (KE639_02499)	clpP	2684700..2685305 (-)	606	WP_051005918.1	ATP-dependent Clp protease proteolytic subunit	Regulator
KE639_RS12525 (KE639_02500)	tig	2685649..2687052 (-)	1404	WP_165287537.1	trigger factor	-
KE639_RS12540 (KE639_02503)	-	2687603..2687797 (-)	195	WP_007449834.1	hypothetical protein	-
KE639_RS12545 (KE639_02504)	-	2688464..2689630 (+)	1167	WP_102928706.1	acyltransferase family protein	-
KE639_RS12550 (KE639_02505)	-	2689671..2690150 (-)	480	WP_212730147.1	HD domain-containing protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 21226.13 Da Isoelectric Point: 4.6747

                                >NTDB_id=490599 KE639_RS12520 WP_051005918.1 2684700..2685305(-) (clpP) [Streptomyces sp. V17-9]

MPSAAGEPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSITAGMAIYDTMQF

IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQTVE

QITRDSDRDRWFDAFEAKEYGLIDDVIPTAAGMPGGGGTGA

Nucleotide

Download Length: 606 bp

                                >NTDB_id=490599 KE639_RS12520 WP_051005918.1 2684700..2685305(-) (clpP) [Streptomyces sp. V17-9]

ATGCCCTCAGCCGCCGGCGAGCCCTCCATCGGTGGCGGCCTCGGCGACCAGGTCTACAACCGACTGCTCGGCGAGCGGAT

CATCTTCCTCGGCCAGCCGGTCGACGACGACATTGCCAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGACCCGG

ACAAGGACATCTTCCTGTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGTATGGCGATCTACGACACCATGCAGTTC

ATCAAGAACGACGTGGTGACGATCGCGATGGGTCTCGCGGCCTCCATGGGACAGTTCCTGCTCAGCGCGGGCACCCCCGG

CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTCATCCACCAGCCCTCGGCCGGCCTCGCCGGCTCGGCCTCGGACATCA

AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACCTCTCAGCACACCGGCCAGACCGTCGAG

CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT

CCCCACGGCCGCCGGCATGCCGGGCGGCGGTGGCACGGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	59.064	85.075	0.502
clpP	Lactococcus lactis subsp. cremoris KW2	53.261	91.542	0.488
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.973	92.04	0.488
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.717	91.542	0.483
clpP	Streptococcus mutans UA159	55.491	86.07	0.478
clpP	Streptococcus pyogenes MGAS315	52.601	86.07	0.453
clpP	Streptococcus pyogenes JRS4	52.601	86.07	0.453
clpP	Streptococcus thermophilus LMG 18311	51.445	86.07	0.443
clpP	Streptococcus thermophilus LMD-9	51.445	86.07	0.443
clpP	Streptococcus pneumoniae Rx1	50.867	86.07	0.438
clpP	Streptococcus pneumoniae D39	50.867	86.07	0.438
clpP	Streptococcus pneumoniae R6	50.867	86.07	0.438
clpP	Streptococcus pneumoniae TIGR4	50.867	86.07	0.438

Detailed information NTG0490599