Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF760_RS14085 | Genome accession | NZ_CP062331 |
| Coordinates | 2817295..2817765 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934753.1 | Uniprot ID | A0A1S5YP95 |
| Organism | Staphylococcus aureus strain NAS_OP_017 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2805678..2823509 | 2817295..2817765 | within | 0 |
Gene organization within MGE regions
Location: 2805678..2823509
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF760_RS13980 (IF760_13955) | - | 2805678..2806715 (-) | 1038 | WP_000857199.1 | site-specific integrase | - |
| IF760_RS13985 (IF760_13960) | - | 2806906..2807619 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| IF760_RS13990 (IF760_13965) | - | 2807697..2807879 (-) | 183 | WP_000705246.1 | hypothetical protein | - |
| IF760_RS13995 (IF760_13970) | - | 2808083..2808424 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| IF760_RS14000 (IF760_13975) | - | 2808430..2809362 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IF760_RS14005 (IF760_13980) | - | 2809378..2810091 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IF760_RS14010 (IF760_13985) | - | 2810054..2810227 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| IF760_RS14015 (IF760_13990) | - | 2810224..2810487 (+) | 264 | WP_000854072.1 | helix-turn-helix transcriptional regulator | - |
| IF760_RS14020 (IF760_13995) | - | 2810503..2810718 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| IF760_RS14025 (IF760_14000) | - | 2810707..2811036 (-) | 330 | WP_000180411.1 | hypothetical protein | - |
| IF760_RS14030 (IF760_14005) | - | 2811087..2811839 (+) | 753 | WP_001148642.1 | phage antirepressor KilAC domain-containing protein | - |
| IF760_RS14035 (IF760_14010) | - | 2811855..2812031 (+) | 177 | WP_001001356.1 | hypothetical protein | - |
| IF760_RS14040 (IF760_14015) | - | 2812028..2812258 (-) | 231 | WP_000549548.1 | hypothetical protein | - |
| IF760_RS14045 (IF760_14020) | - | 2812317..2812637 (+) | 321 | WP_001120199.1 | DUF771 domain-containing protein | - |
| IF760_RS14050 (IF760_14025) | - | 2812634..2812795 (+) | 162 | WP_001285960.1 | DUF1270 domain-containing protein | - |
| IF760_RS14055 (IF760_14030) | - | 2812890..2813209 (+) | 320 | Protein_2731 | DUF2482 family protein | - |
| IF760_RS14060 (IF760_14035) | - | 2813190..2813450 (+) | 261 | WP_000291513.1 | DUF1108 family protein | - |
| IF760_RS14065 (IF760_14040) | - | 2813459..2813722 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF760_RS14070 (IF760_14045) | - | 2813731..2815674 (+) | 1944 | WP_000700561.1 | AAA family ATPase | - |
| IF760_RS14075 (IF760_14050) | - | 2815676..2816596 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| IF760_RS14080 (IF760_14055) | - | 2816677..2817294 (+) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| IF760_RS14085 (IF760_14060) | ssbA | 2817295..2817765 (+) | 471 | WP_000934753.1 | single-stranded DNA-binding protein | Machinery gene |
| IF760_RS14090 (IF760_14065) | - | 2817795..2818688 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| IF760_RS14095 (IF760_14070) | - | 2818695..2818913 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| IF760_RS14100 (IF760_14075) | - | 2818922..2819326 (+) | 405 | WP_000401977.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF760_RS14105 (IF760_14080) | - | 2819339..2819707 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF760_RS14110 (IF760_14085) | - | 2819711..2819953 (+) | 243 | WP_000131383.1 | phi PVL orf 51-like protein | - |
| IF760_RS14115 (IF760_14090) | - | 2819962..2820333 (+) | 372 | WP_001549172.1 | hypothetical protein | - |
| IF760_RS14120 (IF760_14095) | - | 2820326..2820562 (+) | 237 | WP_001065101.1 | DUF1024 family protein | - |
| IF760_RS14125 (IF760_14100) | - | 2820552..2820794 (+) | 243 | WP_000700108.1 | hypothetical protein | - |
| IF760_RS14130 (IF760_14105) | - | 2820787..2821320 (+) | 534 | WP_000181819.1 | dUTP pyrophosphatase | - |
| IF760_RS14135 (IF760_14110) | - | 2821357..2821602 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| IF760_RS14140 (IF760_14115) | - | 2821599..2821805 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| IF760_RS14145 (IF760_14120) | - | 2821802..2822188 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| IF760_RS14150 (IF760_14125) | - | 2822185..2822334 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IF760_RS14155 (IF760_14130) | - | 2822334..2822534 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| IF760_RS14160 (IF760_14135) | - | 2822562..2822978 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IF760_RS14165 (IF760_14140) | - | 2823210..2823509 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17668.55 Da Isoelectric Point: 5.2672
>NTDB_id=487888 IF760_RS14085 WP_000934753.1 2817295..2817765(+) (ssbA) [Staphylococcus aureus strain NAS_OP_017]
MLNRTILVGRLTRDPELRTTQNGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQNGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=487888 IF760_RS14085 WP_000934753.1 2817295..2817765(+) (ssbA) [Staphylococcus aureus strain NAS_OP_017]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAATGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAATGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.497 |
100 |
0.641 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.545 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
33.333 |
100 |
0.378 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
47.5 |
76.923 |
0.365 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
47.5 |
76.923 |
0.365 |