Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | IF776_RS14265 | Genome accession | NZ_CP062314 |
| Coordinates | 2857201..2857671 (+) | Length | 156 a.a. |
| NCBI ID | WP_000934753.1 | Uniprot ID | A0A1S5YP95 |
| Organism | Staphylococcus aureus strain NAS_OP_133 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2845584..2863415 | 2857201..2857671 | within | 0 |
Gene organization within MGE regions
Location: 2845584..2863415
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IF776_RS14160 (IF776_14145) | - | 2845584..2846621 (-) | 1038 | WP_000857199.1 | site-specific integrase | - |
| IF776_RS14165 (IF776_14150) | - | 2846812..2847525 (-) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| IF776_RS14170 (IF776_14155) | - | 2847603..2847785 (-) | 183 | WP_000705246.1 | hypothetical protein | - |
| IF776_RS14175 (IF776_14160) | - | 2847989..2848330 (-) | 342 | WP_000591749.1 | hypothetical protein | - |
| IF776_RS14180 (IF776_14165) | - | 2848336..2849268 (-) | 933 | WP_000759682.1 | exonuclease domain-containing protein | - |
| IF776_RS14185 (IF776_14170) | - | 2849284..2849997 (-) | 714 | WP_001031454.1 | XRE family transcriptional regulator | - |
| IF776_RS14190 (IF776_14175) | - | 2849960..2850133 (+) | 174 | WP_001801500.1 | hypothetical protein | - |
| IF776_RS14195 (IF776_14180) | - | 2850130..2850393 (+) | 264 | WP_031907407.1 | helix-turn-helix transcriptional regulator | - |
| IF776_RS14200 (IF776_14185) | - | 2850409..2850624 (+) | 216 | WP_001025404.1 | MW1434 family type I TA system toxin | - |
| IF776_RS14205 (IF776_14190) | - | 2850613..2850942 (-) | 330 | WP_000180411.1 | hypothetical protein | - |
| IF776_RS14210 (IF776_14195) | - | 2850993..2851745 (+) | 753 | WP_001148642.1 | phage antirepressor KilAC domain-containing protein | - |
| IF776_RS14215 (IF776_14200) | - | 2851761..2851937 (+) | 177 | WP_001001356.1 | hypothetical protein | - |
| IF776_RS14220 (IF776_14205) | - | 2851934..2852164 (-) | 231 | WP_000549548.1 | hypothetical protein | - |
| IF776_RS14225 (IF776_14210) | - | 2852223..2852543 (+) | 321 | WP_001120199.1 | DUF771 domain-containing protein | - |
| IF776_RS14230 (IF776_14215) | - | 2852540..2852701 (+) | 162 | WP_001285960.1 | DUF1270 domain-containing protein | - |
| IF776_RS14235 (IF776_14220) | - | 2852796..2853115 (+) | 320 | Protein_2767 | DUF2482 family protein | - |
| IF776_RS14240 (IF776_14225) | - | 2853096..2853356 (+) | 261 | WP_000291513.1 | DUF1108 family protein | - |
| IF776_RS14245 (IF776_14230) | - | 2853365..2853628 (+) | 264 | WP_001205732.1 | hypothetical protein | - |
| IF776_RS14250 (IF776_14235) | - | 2853637..2855580 (+) | 1944 | WP_000700561.1 | AAA family ATPase | - |
| IF776_RS14255 (IF776_14240) | - | 2855582..2856502 (+) | 921 | WP_000138475.1 | recombinase RecT | - |
| IF776_RS14260 (IF776_14245) | - | 2856583..2857200 (+) | 618 | WP_071665632.1 | MBL fold metallo-hydrolase | - |
| IF776_RS14265 (IF776_14250) | ssbA | 2857201..2857671 (+) | 471 | WP_000934753.1 | single-stranded DNA-binding protein | Machinery gene |
| IF776_RS14270 (IF776_14255) | - | 2857701..2858594 (+) | 894 | WP_000148333.1 | DnaD domain-containing protein | - |
| IF776_RS14275 (IF776_14260) | - | 2858601..2858819 (+) | 219 | WP_000338530.1 | hypothetical protein | - |
| IF776_RS14280 (IF776_14265) | - | 2858828..2859232 (+) | 405 | WP_000401977.1 | RusA family crossover junction endodeoxyribonuclease | - |
| IF776_RS14285 (IF776_14270) | - | 2859245..2859613 (+) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| IF776_RS14290 (IF776_14275) | - | 2859617..2859859 (+) | 243 | WP_000131383.1 | phi PVL orf 51-like protein | - |
| IF776_RS14295 (IF776_14280) | - | 2859868..2860239 (+) | 372 | WP_001549172.1 | hypothetical protein | - |
| IF776_RS14300 (IF776_14285) | - | 2860232..2860468 (+) | 237 | WP_001065101.1 | DUF1024 family protein | - |
| IF776_RS14305 (IF776_14290) | - | 2860458..2860700 (+) | 243 | WP_000700108.1 | hypothetical protein | - |
| IF776_RS14310 (IF776_14295) | - | 2860693..2861226 (+) | 534 | WP_000181819.1 | dUTP pyrophosphatase | - |
| IF776_RS14315 (IF776_14300) | - | 2861263..2861508 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| IF776_RS14320 (IF776_14305) | - | 2861505..2861711 (+) | 207 | WP_000195803.1 | DUF1381 domain-containing protein | - |
| IF776_RS14325 (IF776_14310) | - | 2861708..2862094 (+) | 387 | WP_000592207.1 | hypothetical protein | - |
| IF776_RS14330 (IF776_14315) | - | 2862091..2862240 (+) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| IF776_RS14335 (IF776_14320) | - | 2862240..2862440 (+) | 201 | WP_000265043.1 | DUF1514 family protein | - |
| IF776_RS14340 (IF776_14325) | - | 2862468..2862884 (+) | 417 | WP_000590122.1 | hypothetical protein | - |
| IF776_RS14345 (IF776_14330) | - | 2863116..2863415 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17668.55 Da Isoelectric Point: 5.2672
>NTDB_id=487600 IF776_RS14265 WP_000934753.1 2857201..2857671(+) (ssbA) [Staphylococcus aureus strain NAS_OP_133]
MLNRTILVGRLTRDPELRTTQNGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
MLNRTILVGRLTRDPELRTTQNGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=487600 IF776_RS14265 WP_000934753.1 2857201..2857671(+) (ssbA) [Staphylococcus aureus strain NAS_OP_133]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAATGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAATGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
56.497 |
100 |
0.641 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.545 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
33.333 |
100 |
0.378 |
| ssb | Neisseria meningitidis MC58 |
33.526 |
100 |
0.372 |
| ssb | Neisseria gonorrhoeae MS11 |
33.526 |
100 |
0.372 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
47.5 |
76.923 |
0.365 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
47.5 |
76.923 |
0.365 |