Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IF561_RS13115 Genome accession   NZ_CP062150
Coordinates   2785030..2786142 (-) Length   370 a.a.
NCBI ID   WP_046267920.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 19-VB00998     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2780030..2791142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF561_RS13085 (IF561_13075) hemF 2780491..2781408 (-) 918 WP_264400887.1 oxygen-dependent coproporphyrinogen oxidase -
  IF561_RS13090 (IF561_13080) - 2781456..2782013 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  IF561_RS13095 (IF561_13085) purE 2782213..2782698 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IF561_RS13100 (IF561_13090) - 2782703..2783830 (+) 1128 WP_264400888.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IF561_RS13105 (IF561_13095) - 2783900..2784469 (-) 570 WP_264400889.1 type I DNA topoisomerase -
  IF561_RS13110 (IF561_13100) - 2784548..2785027 (-) 480 WP_005461440.1 DUF494 family protein -
  IF561_RS13115 (IF561_13105) dprA 2785030..2786142 (-) 1113 WP_046267920.1 DNA-processing protein DprA Machinery gene
  IF561_RS13120 (IF561_13110) - 2786126..2787220 (-) 1095 WP_264400890.1 LysM peptidoglycan-binding domain-containing protein -
  IF561_RS13125 (IF561_13115) def 2787359..2787877 (+) 519 WP_005461416.1 peptide deformylase -
  IF561_RS13130 (IF561_13120) fmt 2787911..2788858 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  IF561_RS13135 (IF561_13125) rsmB 2788939..2790222 (+) 1284 WP_193294143.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39936.56 Da        Isoelectric Point: 6.5002

>NTDB_id=486459 IF561_RS13115 WP_046267920.1 2785030..2786142(-) (dprA) [Vibrio parahaemolyticus strain 19-VB00998]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTHKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=486459 IF561_RS13115 WP_046267920.1 2785030..2786142(-) (dprA) [Vibrio parahaemolyticus strain 19-VB00998]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGC
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ATTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae strain A1552

58.649

100

0.586
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Legionella pneumophila strain ERS1305867

47.853

88.108

0.422
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Neisseria meningitidis strain C311

38.619

100

0.408
  dprA Neisseria meningitidis MC58

38.619

100

0.408
  dprA Neisseria gonorrhoeae MS11

36.504

100

0.384
  dprA Neisseria gonorrhoeae strain FA1090

36.247

100

0.381