Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IGB08_RS13135 Genome accession   NZ_CP062059
Coordinates   2809021..2810283 (+) Length   420 a.a.
NCBI ID   WP_003641503.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain PMO08     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2804021..2815283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IGB08_RS13115 (IGB08_13115) yfmF 2804603..2805868 (+) 1266 WP_176791505.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  IGB08_RS13120 (IGB08_13120) yfmH 2805865..2807166 (+) 1302 WP_003644640.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  IGB08_RS13125 (IGB08_13125) - 2807270..2808142 (+) 873 WP_003641501.1 helix-turn-helix domain-containing protein -
  IGB08_RS13130 (IGB08_13130) pgsA 2808165..2808749 (+) 585 WP_003641502.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IGB08_RS13135 (IGB08_13135) cinA 2809021..2810283 (+) 1263 WP_003641503.1 competence/damage-inducible protein A Machinery gene
  IGB08_RS13140 (IGB08_13140) recA 2810375..2811517 (+) 1143 WP_003641504.1 recombinase RecA Machinery gene
  IGB08_RS13145 (IGB08_13145) rny 2811748..2813307 (+) 1560 WP_003644638.1 ribonuclease Y -
  IGB08_RS13150 (IGB08_13150) - 2813432..2814238 (+) 807 WP_003641506.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45171.26 Da        Isoelectric Point: 5.6636

>NTDB_id=485962 IGB08_RS13135 WP_003641503.1 2809021..2810283(+) (cinA) [Lactiplantibacillus plantarum strain PMO08]
MQAEIIAVGTEILLGQITNTNSTYIARGLAELGIDSYYQTVVGDNRQRLSTVIEIAAQRNDLVILTGGLGPTKDDLTKQT
LAHYLNVALVEDQAAMQKITAWFATNDKVMTANNRLQALYPAGAQPLTNHNGMAVGAFYQSENSADFLLLPGPPRELAVM
FDSEAKPKLAAAYGEQAQIYSRVMRFYGISESELATRLHPLIDEQQAVTIAPYAKTNEVTLRLSAQAMTETAARGMIDKV
DHQIKATIGPYFYGYGDDNSLVTTVINQMIAAKLSITAAESLTAGLFQSTIGSVSGVSAIFPGGFVTYANEAKHQLVNVP
QAIIDAEGVVSEATAKAMASGAKQQLNTDVGISFTGVAGPGTLEGQPAGTVWIGLAYRDRPVKAKQYHFAGNRQQIRERS
VMAGLDLLRHALNEDTDLKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=485962 IGB08_RS13135 WP_003641503.1 2809021..2810283(+) (cinA) [Lactiplantibacillus plantarum strain PMO08]
ATGCAAGCAGAAATAATCGCGGTTGGTACCGAGATTTTACTGGGTCAGATTACGAACACGAATAGTACGTACATCGCACG
TGGATTGGCCGAATTAGGAATTGATAGCTATTATCAAACGGTGGTTGGTGATAATCGGCAACGTTTGTCGACCGTCATTG
AAATTGCGGCCCAGCGGAATGACTTAGTTATTTTAACGGGTGGTTTGGGGCCGACCAAGGATGACTTGACGAAGCAGACG
CTCGCGCATTATTTGAATGTTGCCTTGGTTGAAGATCAGGCAGCAATGCAAAAAATTACGGCCTGGTTTGCCACTAATGA
CAAAGTAATGACGGCCAACAACCGATTACAGGCATTGTATCCGGCAGGCGCGCAACCGTTGACTAATCATAACGGAATGG
CTGTTGGTGCGTTTTATCAGTCAGAAAATAGTGCTGATTTCTTGTTATTGCCAGGTCCACCCCGTGAGTTAGCCGTAATG
TTTGATTCTGAGGCAAAACCGAAATTGGCAGCTGCATATGGGGAACAAGCCCAAATCTATTCGCGAGTGATGCGTTTTTA
TGGCATCAGTGAGTCTGAATTGGCGACCCGGTTGCACCCCTTGATTGATGAACAGCAGGCGGTTACGATCGCACCCTATG
CCAAGACTAACGAGGTTACCCTCAGATTGAGTGCCCAAGCTATGACGGAAACGGCTGCAAGGGGAATGATCGACAAAGTT
GACCACCAGATCAAGGCTACCATTGGGCCGTACTTTTACGGTTATGGAGACGATAACTCGTTAGTTACTACTGTTATTAA
TCAAATGATTGCGGCTAAGCTGAGTATTACAGCCGCTGAAAGCTTAACAGCTGGGCTGTTTCAGAGTACCATCGGCAGTG
TGTCCGGGGTCTCCGCAATCTTTCCGGGCGGCTTTGTAACGTATGCGAATGAGGCCAAACATCAGCTAGTGAACGTTCCA
CAAGCAATTATTGACGCTGAGGGCGTGGTTTCAGAAGCGACCGCTAAGGCCATGGCGAGTGGTGCTAAGCAGCAGCTAAA
TACTGATGTTGGTATCAGTTTTACAGGCGTTGCCGGTCCAGGAACCTTGGAAGGTCAACCGGCTGGAACGGTATGGATTG
GTCTTGCTTACCGTGATCGACCCGTGAAGGCCAAGCAGTACCATTTTGCTGGTAATCGACAACAAATTCGGGAACGCAGT
GTGATGGCCGGGTTAGACCTATTGAGACATGCATTGAATGAAGATACGGACTTAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(260-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

48.349

100

0.488
  cinA Streptococcus pneumoniae TIGR4

48.113

100

0.486
  cinA Streptococcus pneumoniae Rx1

48.113

100

0.486
  cinA Streptococcus pneumoniae R6

48.113

100

0.486
  cinA Streptococcus pneumoniae D39

47.877

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.17

100

0.476
  cinA Streptococcus mutans UA159

47.952

98.81

0.474
  cinA Bacillus subtilis subsp. subtilis str. 168

44.31

98.333

0.436
  cinA Streptococcus suis isolate S10

39.423

99.048

0.39