Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IF103_RS01515 Genome accession   NZ_CP061944
Coordinates   338345..339613 (+) Length   422 a.a.
NCBI ID   WP_104883045.1    Uniprot ID   -
Organism   Pseudomonas sp. SK2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333345..344613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF103_RS01495 (IF103_01495) - 333369..335822 (-) 2454 WP_027907909.1 penicillin-binding protein 1A -
  IF103_RS01500 (IF103_01500) pilM 335994..336884 (+) 891 WP_104882282.1 pilus assembly protein PilM -
  IF103_RS01505 (IF103_01505) - 336872..337408 (+) 537 WP_023378224.1 PilN domain-containing protein -
  IF103_RS01510 (IF103_01510) - 337465..338412 (+) 948 WP_238546532.1 pilus assembly protein PilP -
  IF103_RS01515 (IF103_01515) pilQ 338345..339613 (+) 1269 WP_104883045.1 secretin N-terminal domain-containing protein Machinery gene
  IF103_RS01520 (IF103_01520) aroK 339618..340136 (+) 519 WP_023378227.1 shikimate kinase AroK -
  IF103_RS01525 (IF103_01525) aroB 340234..341331 (+) 1098 WP_023378228.1 3-dehydroquinate synthase -
  IF103_RS01530 (IF103_01530) - 341347..342972 (+) 1626 WP_104883044.1 AAA family ATPase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45780.59 Da        Isoelectric Point: 4.9317

>NTDB_id=485673 IF103_RS01515 WP_104883045.1 338345..339613(+) (pilQ) [Pseudomonas sp. SK2]
MKCLLRWIAAALLVVPPVMAAPDRGEPLSLNFQDVPVRSVLQVMADYAGINLVASDAVQGNITLRLQDVPWDQALELVLR
SKGLGRHQEGNVLLVAPAAELAEQSQGERIGQELEAQLQPLSRALLPIHHAKASELVELLQATLADDGILTGRGSLAVDA
RTNTLIAHQPADRLAELRRLVAELDVPLRQVAIEARIVEANVDYEKSLGVRWGGPLYGETAQLGRDLFVDLGVDRATSGV
GLGLLRAEVLLDLELSAMEKSGNGEIISQPKVVTGDKETARILKGTEVPYQETSKSGATSVAFREASLSLEVTPQITPDG
KVIMAVRVTKDEPDYVNALNDVPPIRKNEVNARVRVADGETIVIGGVYSTTQNKVIDKVPFFGDLPYVGRLFRRDALQEK
KSELLVFLTPRIMSDQAIAVSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=485673 IF103_RS01515 WP_104883045.1 338345..339613(+) (pilQ) [Pseudomonas sp. SK2]
ATGAAATGCCTGTTGAGGTGGATCGCGGCGGCGTTGTTGGTAGTCCCGCCGGTCATGGCGGCGCCTGACCGGGGGGAGCC
GCTGTCGCTGAATTTCCAGGATGTGCCCGTGCGCTCAGTGTTGCAGGTGATGGCCGACTACGCGGGCATCAACCTGGTAG
CCAGCGATGCCGTGCAAGGCAACATCACGTTGAGATTGCAGGATGTGCCGTGGGATCAGGCGCTGGAGCTGGTGTTGCGC
AGCAAGGGGCTGGGCCGTCACCAAGAGGGCAATGTGTTGCTTGTGGCGCCGGCCGCCGAGTTGGCCGAGCAGTCCCAGGG
CGAGCGGATCGGGCAGGAGCTGGAGGCTCAGTTGCAGCCCCTGAGCCGGGCATTGCTGCCCATCCACCATGCCAAGGCTT
CTGAACTTGTCGAGTTGCTCCAGGCGACCCTGGCGGACGACGGTATTCTGACCGGTCGCGGCAGCCTGGCGGTCGATGCG
CGTACCAACACGCTGATCGCCCACCAGCCAGCCGATAGGCTGGCCGAATTGCGCAGATTGGTGGCCGAACTGGACGTGCC
GCTGCGGCAAGTGGCGATCGAGGCGCGCATCGTCGAGGCCAATGTCGACTACGAAAAGAGCCTGGGCGTGCGCTGGGGTG
GACCGCTGTATGGCGAAACAGCGCAGTTGGGTCGTGATTTGTTCGTTGACTTGGGGGTAGACAGGGCGACCTCCGGGGTG
GGGTTGGGCTTGCTGCGCGCGGAAGTGCTGCTGGATCTTGAGCTCAGTGCCATGGAGAAAAGCGGCAACGGCGAAATCAT
CTCGCAGCCCAAGGTGGTGACGGGCGACAAGGAAACCGCCAGAATCCTCAAAGGCACCGAAGTGCCATATCAGGAGACCA
GCAAGAGCGGCGCCACGTCTGTCGCTTTCCGCGAGGCATCGTTGTCCCTCGAGGTCACGCCGCAGATCACCCCAGACGGC
AAGGTGATCATGGCAGTCAGAGTGACCAAGGACGAGCCGGACTACGTCAACGCCTTGAACGACGTGCCTCCGATCCGCAA
GAACGAGGTCAATGCCAGGGTTCGTGTAGCTGATGGCGAAACGATAGTGATCGGCGGAGTCTATTCGACCACGCAAAACA
AAGTGATCGACAAGGTGCCATTTTTTGGCGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAGAAA
AAATCCGAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(125-190)

Bacterial type II and III secretion system protein (Secretin)

(257-413)

Secretin and TonB N terminus short domain (STN)

(51-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

59.217

100

0.609
  pilQ Acinetobacter baumannii D1279779

40.132

100

0.434
  pilQ Acinetobacter baumannii strain A118

40.132

100

0.434
  comQ Acinetobacter baylyi ADP1

40.94

100

0.434
  pilQ Legionella pneumophila strain ERS1305867

42.548

98.578

0.419
  pilQ Legionella pneumophila strain Lp02

42.548

98.578

0.419
  pilQ Vibrio campbellii strain DS40M4

39.954

100

0.41
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

40.964

98.341

0.403
  pilQ Vibrio cholerae strain A1552

40.964

98.341

0.403