Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IF130_RS05030 Genome accession   NZ_CP061840
Coordinates   1086216..1088312 (+) Length   698 a.a.
NCBI ID   WP_011213357.1    Uniprot ID   A0A3A6W2J6
Organism   Legionella pneumophila subsp. pneumophila strain AW-13-4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1081216..1093312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF130_RS05005 (IF130_05005) - 1081978..1082985 (-) 1008 WP_011213352.1 hypothetical protein -
  IF130_RS05010 (IF130_05010) pilM 1083402..1084466 (+) 1065 WP_011213353.1 type IV pilus assembly protein PilM Machinery gene
  IF130_RS05015 (IF130_05015) pilN 1084470..1085018 (+) 549 WP_011213354.1 PilN domain-containing protein Machinery gene
  IF130_RS05020 (IF130_05020) pilO 1085032..1085631 (+) 600 WP_011213355.1 type 4a pilus biogenesis protein PilO Machinery gene
  IF130_RS05025 (IF130_05025) pilP 1085628..1086212 (+) 585 WP_011213356.1 pilus assembly protein PilP Machinery gene
  IF130_RS05030 (IF130_05030) pilQ 1086216..1088312 (+) 2097 WP_011213357.1 type IV pilus secretin PilQ Machinery gene
  IF130_RS05035 (IF130_05035) aroK 1088758..1089285 (+) 528 WP_010946667.1 shikimate kinase AroK -
  IF130_RS05040 (IF130_05040) aroB 1089272..1090381 (+) 1110 WP_011213358.1 3-dehydroquinate synthase -
  IF130_RS05045 (IF130_05045) - 1090378..1091829 (+) 1452 WP_011213359.1 SPOR domain-containing protein -
  IF130_RS05050 (IF130_05050) - 1091938..1092369 (+) 432 WP_011213360.1 universal stress protein -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 77455.69 Da        Isoelectric Point: 9.4307

>NTDB_id=484966 IF130_RS05030 WP_011213357.1 1086216..1088312(+) (pilQ) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
MRKIIAILILISASLSLAYSKDNSLISVQVLPLPENRVRIDFQFSKPLKQLPASFITQKPPRLVLDFISTDMQIPSDQKT
KTIQLGSLHSYNIVAVGDRVRAILELDRSVSYSGSTAGSVYSLVLNGKSNDLFENSKEVFITNQVVNAKHEIKRIDFRGI
EKQGGRVLIDVSDTGIPIDVTQVGKEIVVNFLNTKIPLNLMKRYDVSDFHSPVQIITMQQEGKKVRMTILSKGDYGHFVY
QVNKQFMVDVFPLTAEEIRQAKLKKQVFTGKRISLNFQNISIRAVLQLLADFTGINMVVSDKVQGDITLRLNDIPWDQAL
DIILTTQGLDKRRKGNVMLIDTKASMDKMEEEQLKSQQTIEKLEPIRSDLIQINYAKAADIAVLIKDKQNSLLSDRGKIS
VDARTNTIWIQDTGTKIEEVRELIKQLDIPVKQVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAPA
NVVPLERRLNLDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPRLITTNQQAAVIESGEEIPYQE
ATSSGATAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQTFLGVPAIITKEIQTNVLVNNGQTIVLGGIYKQDKN
KVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRIITNALSITTIEGREKDVYK

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=484966 IF130_RS05030 WP_011213357.1 1086216..1088312(+) (pilQ) [Legionella pneumophila subsp. pneumophila strain AW-13-4]
GTGAGAAAAATTATCGCGATTTTGATATTAATTAGTGCCAGTTTGAGCCTGGCATATTCTAAAGATAATTCGCTCATTTC
AGTACAAGTATTGCCATTGCCCGAAAACAGAGTACGTATTGATTTTCAATTTTCCAAGCCCTTAAAGCAGTTGCCCGCAA
GCTTTATTACTCAAAAGCCGCCTCGTTTGGTGTTAGATTTTATCAGCACTGATATGCAAATTCCTTCGGATCAGAAAACT
AAAACTATTCAATTAGGCTCATTACACAGTTATAACATTGTTGCTGTTGGTGATAGAGTAAGAGCCATATTAGAACTGGA
TCGTTCAGTGTCCTATTCTGGCAGTACGGCTGGTTCCGTTTATAGCCTTGTCCTGAATGGTAAAAGCAATGATTTATTTG
AAAATAGCAAGGAGGTATTCATAACGAACCAGGTTGTGAACGCCAAGCATGAAATTAAAAGAATTGATTTTCGTGGTATA
GAAAAGCAGGGAGGTAGAGTTTTAATTGATGTTTCTGATACGGGTATTCCAATTGATGTAACTCAAGTTGGGAAAGAAAT
AGTCGTTAATTTCTTGAATACCAAGATCCCTTTGAATTTAATGAAACGGTATGATGTTTCTGATTTTCACAGCCCTGTGC
AGATTATTACGATGCAACAGGAAGGCAAAAAGGTTCGCATGACCATCCTCAGCAAAGGGGATTATGGGCATTTTGTTTAT
CAGGTCAATAAACAATTTATGGTCGATGTCTTTCCTTTAACTGCGGAAGAAATTCGTCAGGCGAAATTGAAGAAACAGGT
ATTTACCGGTAAACGGATTTCTTTGAATTTCCAGAATATTAGTATTCGAGCTGTGCTTCAACTTCTGGCAGATTTTACCG
GAATCAATATGGTTGTCAGTGACAAAGTGCAAGGAGATATTACGCTTAGATTAAATGATATCCCCTGGGATCAGGCTCTT
GATATTATTTTAACCACACAAGGGCTAGATAAGCGCAGAAAGGGCAACGTCATGTTGATAGATACCAAAGCCTCCATGGA
TAAAATGGAGGAAGAACAACTCAAAAGTCAACAGACAATTGAAAAACTTGAGCCTATCCGCTCTGATTTAATACAGATTA
ATTATGCAAAGGCAGCAGATATTGCTGTTTTGATCAAGGATAAGCAAAACTCCCTATTATCAGACAGAGGAAAAATAAGT
GTTGATGCCAGAACGAATACAATCTGGATTCAGGATACTGGCACCAAAATTGAGGAAGTAAGGGAACTGATAAAGCAATT
GGATATCCCTGTTAAGCAAGTGCTTATTGAGGCAAGAATTGTTGAAGTAACTAAAGATTTTAGCCAGGATATTGGAATAC
GCTGGGGGGTATCAAGACCAACTCACTTAAGTGGTACACTGGAAGGTGCTAATGAGTTAGCGAGAGGCACAGCACCAGCC
AATGTTGTCCCCTTGGAAAGAAGGTTAAATCTTGATTTGGCAGCTGCTCCTTTAACTGGAGCTACACCGGCCTCGGTAGG
TATTGCGCTAGCTAAACTTAATGATAACATTCTGCTTGATCTGGAGTTGTCTGCTTTGGAAAGCGAAGGGCGTGCTGAAT
TAATATCCAGTCCTCGCCTGATTACTACGAATCAACAGGCAGCAGTCATAGAGTCTGGTGAGGAGATTCCCTATCAGGAG
GCAACATCAAGTGGAGCGACTGCTGTTGCATTTAAAAAAGCAGTATTGAGTTTGAAAGTTACGCCGCAAATTACGCCTGA
TGGTAAAATTTTGATGGATTTACAGATAAATCAGGATACTCCTTCCCCACAAACATTCCTTGGTGTTCCAGCGATAATAA
CAAAGGAGATTCAGACGAATGTTCTGGTTAATAATGGACAAACCATAGTACTTGGAGGTATTTATAAGCAAGATAAGAAC
AAGGTAATCAATAGAATTCCTTTCTTTGGTGAGTTGCCTGTTGTCGGTATTTTATTTAGTAATAGACAAATCACATTGAA
AAATGAAGAGTTACTTATTTTTATTACACCAAGAATAATAACGAATGCCTTATCGATTACAACGATAGAGGGACGTGAGA
AAGATGTTTATAAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(525-680)

Bacterial type II/III secretion system short domain (Secretin_N)

(370-433)

AMIN domain (AMIN)

(42-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A6W2J6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Legionella pneumophila strain ERS1305867

99.713

100

0.997
  pilQ Legionella pneumophila strain Lp02

99.57

100

0.996
  pilQ Pseudomonas aeruginosa PAK

37.872

100

0.383
  comQ Acinetobacter baylyi ADP1

38.574

98.424

0.38
  pilQ Acinetobacter baumannii strain A118

35.014

100

0.368
  pilQ Acinetobacter baumannii D1279779

35.014

100

0.368