Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IC772_RS01720 Genome accession   NZ_CP061664
Coordinates   359195..361306 (+) Length   703 a.a.
NCBI ID   WP_191016393.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354195..366306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS01700 (IC772_01700) pilM 356156..357214 (+) 1059 WP_039251099.1 pilus assembly protein PilM Machinery gene
  IC772_RS01705 (IC772_01705) pilN 357214..357858 (+) 645 WP_019457875.1 PilN domain-containing protein Machinery gene
  IC772_RS01710 (IC772_01710) pilO 357855..358595 (+) 741 WP_191016391.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC772_RS01715 (IC772_01715) pilP 358606..359133 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC772_RS01720 (IC772_01720) pilQ 359195..361306 (+) 2112 WP_191016393.1 type IV pilus secretin PilQ family protein Machinery gene
  IC772_RS01725 (IC772_01725) aroK 361318..361887 (+) 570 WP_191016394.1 shikimate kinase AroK -
  IC772_RS01730 (IC772_01730) aroB 361916..362998 (+) 1083 WP_191016396.1 3-dehydroquinate synthase -
  IC772_RS01735 (IC772_01735) - 363014..363887 (+) 874 Protein_338 hypothetical protein -

Sequence

Protein


Download         Length: 703 a.a.        Molecular weight: 76023.37 Da        Isoelectric Point: 6.3528

>NTDB_id=483918 IC772_RS01720 WP_191016393.1 359195..361306(+) (pilQ) [Acinetobacter seifertii strain AS28]
MNQVFRQFSMGAVAIAIMQAASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDVRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTTNKPIPAATAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPTHLTRRLNVNDFATPVSSIDAYNEKGAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKGVASSFKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVTELIKAEDDEAKALAQTIKLAPIQTDYIRLNYAKAADVLKLIEETRDAKGAAVNRTANSDTLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKIHKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITKNNDLLVG
GSETTLWNLKNPDSSGKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTADKQPA
KVATGQQVPYQTSTTSGAGSTATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSIAGEAPNGELILNKNNINTNVLVDN
GETVILGGVFEQTTKNSQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2112 bp        

>NTDB_id=483918 IC772_RS01720 WP_191016393.1 359195..361306(+) (pilQ) [Acinetobacter seifertii strain AS28]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAACCCTTCGCGTTTAATACTAGATTTTGATAAAGCGCAACAAAGTTTAAAGCAGTCTAAAATT
GCTGTTGCAACGAATGAAGCAAGTTCCGTTGATGTGACTTCGGATGATGTGCGTTCACGCTTAACTGTAAATCTAAAAGA
TGCTGGTGCTTTTACAACGCGCGTGGAAGGCAATACTTTTATTCTAAAAATTAATTCAGCTCAAACAACGAATAAGCCGA
TACCAGCAGCTACCGCACAACCACAAGGTGTTTCAAATATTGGCTTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTCGATCTTTTGGGAAGTAATACGCCTGTAGATGTTCAACAACAGGGCAGTAAGGTTGTTATAAGAACATTAGGTACAAA
GATTCCGACACATTTAACGCGCCGCTTAAATGTAAATGATTTTGCAACACCTGTTTCAAGTATCGATGCTTATAATGAAA
AAGGTGCTGGTGTAATCACAATTCAGTCATCTGGTAGTTATGAATATATGGCGTATCAAGCTGAAAATAAGCTGACCATT
AGTTTGAAACGTCCTCAAGATAAAGGTGTAGCATCTTCATTTAAAACACCAAATTATTCAGGCAATAAACTTTCATTAGA
CTTCCAAGACATTGAAGTGCGTCGTGTATTACAGTTGCTTGCCGATTTTACAGGCATCAATATGGTGGCTGCTGATAGTG
TGCAAGGTAACATCACGCTACGTTTGAAAGATGTACCTTGGGATCAAGCACTAGATATTATTTTAAAAACTAAAAATCTT
GATAAACGTCGTAATGGGAATGTAATTTGGATTGCTCCTGTTACTGAATTAATTAAAGCAGAAGATGATGAGGCAAAAGC
CTTAGCTCAAACGATTAAGTTAGCACCAATCCAAACAGATTATATTCGTTTGAATTATGCGAAAGCAGCGGATGTACTTA
AGTTAATTGAAGAGACCCGTGATGCAAAAGGAGCAGCCGTAAACCGGACTGCCAATTCAGATACCCTCGCTTTAGAGAGT
TTATTGAGCTCACGTGGTAGCGCGGTTGCTGATACACGTACTAATACTTTAATTGTAAATGATACAGCACAAAATATTGA
TAAAATTCATAAAATGATTGATTTGCTTGATGTACAGGTTAAGCAAGTTATGGTTGAAGCACGTATTGTGAGAGCCTCTA
CCTCATTTACCAAAGAACTTGGGGTAAAGTGGGGTATTCTTTCGCAAGGAATTACCAAAAATAATGATTTATTGGTTGGT
GGAAGTGAAACAACTTTATGGAATTTAAAAAATCCAGATAGCAGTGGGAAGTATACAATTGAACGTCCAGATAATTTAAA
CGTTGATTTGGGCGTTTCTAATCCAGCAGGAAGTATTGCCTTTGGCCTCATTAGTATGTCTGATTTTATGTTAGATCTTG
AACTCTCAGCTTTACAGGCTGATGGTTATGGTGAGGTGATTTCAACACCTAAAGTGATGACTGCAGATAAGCAGCCTGCA
AAAGTTGCCACGGGTCAGCAAGTTCCATATCAGACCAGCACCACTTCTGGTGCTGGTTCTACAGCGACAACATCATTTAA
AGATGCTCTCTTAAGTCTGGATGTTACTCCAAGCATTACACCTGATGGCAAGATTCAAATGAAATTAGATATTTCTAAGG
ATTCTATAGCTGGTGAAGCACCGAATGGTGAATTAATTCTGAATAAGAATAATATCAATACCAATGTATTGGTGGATAAT
GGAGAAACTGTCATTTTAGGTGGTGTATTTGAGCAGACAACAAAGAATTCTCAAACCAAAGTTCCATTTTTCGGTGATAT
TCCTTTAGTTGGACGTTTATTCAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTACTGATTTTCGTAACACCACGAA
TTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(537-695)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

AMIN domain (AMIN)

(39-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

86.685

100

0.889
  pilQ Acinetobacter baumannii strain A118

86.546

100

0.888
  comQ Acinetobacter baylyi ADP1

74.225

100

0.75
  pilQ Pseudomonas aeruginosa PAK

39.411

100

0.4