Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IC772_RS01715 Genome accession   NZ_CP061664
Coordinates   358606..359133 (+) Length   175 a.a.
NCBI ID   WP_004705193.1    Uniprot ID   N8SH39
Organism   Acinetobacter seifertii strain AS28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 353606..364133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS01700 (IC772_01700) pilM 356156..357214 (+) 1059 WP_039251099.1 pilus assembly protein PilM Machinery gene
  IC772_RS01705 (IC772_01705) pilN 357214..357858 (+) 645 WP_019457875.1 PilN domain-containing protein Machinery gene
  IC772_RS01710 (IC772_01710) pilO 357855..358595 (+) 741 WP_191016391.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC772_RS01715 (IC772_01715) pilP 358606..359133 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC772_RS01720 (IC772_01720) pilQ 359195..361306 (+) 2112 WP_191016393.1 type IV pilus secretin PilQ family protein Machinery gene
  IC772_RS01725 (IC772_01725) aroK 361318..361887 (+) 570 WP_191016394.1 shikimate kinase AroK -
  IC772_RS01730 (IC772_01730) aroB 361916..362998 (+) 1083 WP_191016396.1 3-dehydroquinate synthase -
  IC772_RS01735 (IC772_01735) - 363014..363887 (+) 874 Protein_338 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19340.53 Da        Isoelectric Point: 9.4007

>NTDB_id=483917 IC772_RS01715 WP_004705193.1 358606..359133(+) (pilP) [Acinetobacter seifertii strain AS28]
MKIKQITLYILACAALVGCDSRIDAVNQQMANIRNQPPLAIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRTPQPLESYALEALSMKGSMRNSRGQILALIQTPDHQVERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=483917 IC772_RS01715 WP_004705193.1 358606..359133(+) (pilP) [Acinetobacter seifertii strain AS28]
ATGAAAATTAAGCAAATTACTCTTTATATTTTGGCTTGTGCTGCGCTTGTAGGATGTGATTCAAGAATTGATGCAGTCAA
TCAGCAAATGGCAAATATCCGTAATCAACCGCCGCTAGCTATTGAACCAGCACCTATTTTTACTCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGCTCACTGGCTGCTGAACTCAAAATTATGGCTGGAAAACGT
GTTTATCCAAATTTCTCACGTACGCCACAGCCATTAGAAAGTTATGCACTTGAGGCTTTAAGTATGAAAGGAAGCATGCG
CAATAGTCGTGGTCAAATATTAGCTCTCATCCAGACACCAGATCATCAAGTTGAACGGGTACAAGTGGGCAATTATATGG
GCATGAATCAGGGCCGTATTACCCAGATTAGTCCGACTCAGATTGATTTGGTCGAGATCGTACCAGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SH39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

94.286

100

0.943
  comL Acinetobacter baylyi ADP1

70.69

99.429

0.703