Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IC772_RS01705 Genome accession   NZ_CP061664
Coordinates   357214..357858 (+) Length   214 a.a.
NCBI ID   WP_019457875.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS28     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352214..362858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC772_RS01685 (IC772_01685) - 352263..352595 (+) 333 WP_077163639.1 hypothetical protein -
  IC772_RS01690 (IC772_01690) - 352604..353422 (+) 819 WP_410548985.1 putative RNA methyltransferase -
  IC772_RS01695 (IC772_01695) ponA 353440..355995 (-) 2556 WP_191016390.1 penicillin-binding protein PBP1a -
  IC772_RS01700 (IC772_01700) pilM 356156..357214 (+) 1059 WP_039251099.1 pilus assembly protein PilM Machinery gene
  IC772_RS01705 (IC772_01705) pilN 357214..357858 (+) 645 WP_019457875.1 PilN domain-containing protein Machinery gene
  IC772_RS01710 (IC772_01710) pilO 357855..358595 (+) 741 WP_191016391.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC772_RS01715 (IC772_01715) pilP 358606..359133 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC772_RS01720 (IC772_01720) pilQ 359195..361306 (+) 2112 WP_191016393.1 type IV pilus secretin PilQ family protein Machinery gene
  IC772_RS01725 (IC772_01725) aroK 361318..361887 (+) 570 WP_191016394.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24136.49 Da        Isoelectric Point: 5.3957

>NTDB_id=483915 IC772_RS01705 WP_019457875.1 357214..357858(+) (pilN) [Acinetobacter seifertii strain AS28]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQDLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEDKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTADNNADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=483915 IC772_RS01705 WP_019457875.1 357214..357858(+) (pilN) [Acinetobacter seifertii strain AS28]
ATGGCAACAATTAATTTACTACCTTGGCGTGAAGAGCTGAGGGAGCAAAGAAAAAAACAATTTATAACGTTATGCTTTGG
GGTGGTTGTGTTAGGAATTACAACCGTATTTGGGGGGTGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ATCAACTTATTACAAGTACTAACCAAAACCTTGATCAGCAATTAAAAGCATTAAATGGTTTACAAGAACAACGTGATGCC
ATTATTGAGCGCATGAAATTGATTCAAGATTTACAGAGTCAGCGTCCAGTCGTGGTAAGACTGGTTGATGAGTTAGTCAG
AGTCACGCCGCCTGCAATGTATTTAACGAAATTTAGCAGAACTGGGGATAAATTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTAGCTGAACTACTGCGTAATCTTGAAGCATCTCCTTGGTATCGAAATGCTTTTATGAACTCTTTCTTGGCT
ACTGAAGATAAAAAAGATAAGGCAGCAAGTTCTCTTCTTCCTAGGGTAGAAGATCATTACGGTAGTTTTGTTGTGACTGT
CGATTTAGGGGAAATGGGCGTGACCACAGCTGATAATAATGCTGATAAACCAGCCGTAGCTAAAGATACGGGGGCAGCAA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

92.523

100

0.925
  comN Acinetobacter baylyi ADP1

70.616

98.598

0.696