Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IC780_RS01635 Genome accession   NZ_CP061629
Coordinates   340885..342111 (-) Length   408 a.a.
NCBI ID   WP_077169130.1    Uniprot ID   A0A7H2X3S9
Organism   Acinetobacter seifertii strain AS47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335885..347111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC780_RS22015 - 336791..337226 (+) 436 Protein_306 tetratricopeptide repeat protein -
  IC780_RS01610 (IC780_01605) - 337303..337629 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  IC780_RS01615 (IC780_01610) rlmB 337732..338481 (+) 750 WP_039251214.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IC780_RS01620 (IC780_01615) - 338516..339430 (+) 915 WP_077169133.1 DMT family transporter -
  IC780_RS01625 (IC780_01620) coaE 339427..340023 (-) 597 WP_077169132.1 dephospho-CoA kinase -
  IC780_RS21975 (IC780_01625) pilD 340025..340885 (-) 861 WP_077169131.1 prepilin peptidase Machinery gene
  IC780_RS01635 (IC780_01630) pilC 340885..342111 (-) 1227 WP_077169130.1 type II secretion system F family protein Machinery gene
  IC780_RS01640 (IC780_01635) pilB 342139..343851 (-) 1713 WP_077169129.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IC780_RS01645 (IC780_01640) tpiA 344141..344935 (+) 795 WP_151731148.1 triose-phosphate isomerase -
  IC780_RS01650 (IC780_01645) secG 344948..345277 (+) 330 WP_019456770.1 preprotein translocase subunit SecG -
  IC780_RS01670 (IC780_01665) rimP 345914..346438 (+) 525 WP_002157009.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44995.51 Da        Isoelectric Point: 9.8690

>NTDB_id=483679 IC780_RS01635 WP_077169130.1 340885..342111(-) (pilC) [Acinetobacter seifertii strain AS47]
MAVKKAQMMPTFAYEGVDRKGVKIRGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQEYWFIMIIAIGAMIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAVQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTAMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=483679 IC780_RS01635 WP_077169130.1 340885..342111(-) (pilC) [Acinetobacter seifertii strain AS47]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAGAGGAGA
ACTGCCAGCTAAAAATATGGCTTTAGCTAAAGTGACCTTACGCAAACAAGGGGTTACTGTTCGAACCATACGTGAGAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACCCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTGGTACAAGGCTTTGAAATAGTAGCAGAAGGTTTAGAAAATCCAGCCATGCGTGAGGT
AGTACTCGGTATTAAAGGTGAAGTGGAAGGTGGTAGTACCTTTGCCTCAGCTTTAAAAAAGTATCCTCAATATTTTGATA
ATTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGTGCGCTTGAAACCATGCTAGATCGTGTGGCGATTTACAAA
GAAAAAAGTGAATTGTTAAAACAGAAAATCAAGAAAGCAATGAAATATCCTGCAACGGTTATTGTGGTAGCGATTGTGGT
GACCATTATTTTGATGGTTAAAGTCGTACCCGTGTTTCAGGATCTGTTTTCTTCATTCGGAGCAGAATTACCAGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAAGAATACTGGTTTATTATGATTATCGCGATTGGTGCAATGATTGCC
GCCTTTTTAGAAGCTAAAAAACGCAGTAAGAAGTTTCGTGACGGCTTAGATAAACTAGCGCTTAAATTACCTATTTTTGG
GGATTTGGTCTATAAAGCAATTATTGCACGTTATAGCCGGACGCTTGCGACCACATTCGCAGCTGGTGTTCCGCTCATTG
ATGCACTTGAGTCAACCGCCGGCGCAACCAACAATGTCATCTATGAGCAAGCTGTCATGAAAATTCGTGAAGATGTCGCA
ACAGGTCAACAACTTCAGTTTGCCATGCGTGTATCTAACCGTTTTCCTTCTATGGCTGTACAAATGGTTGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCTACCTATTACGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTGCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTACTGGTAGGCGGTCTGGTGATTGCCATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H2X3S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.059

100

0.971
  pilC Acinetobacter baylyi ADP1

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.753

99.265

0.593
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

47.619

97.794

0.466
  pilG Neisseria meningitidis 44/76-A

47.619

97.794

0.466
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.347

99.02

0.4
  pilC Thermus thermophilus HB27

37.157

98.284

0.365