Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   AVCA_RS10745 Genome accession   NC_021149
Coordinates   2360054..2360674 (+) Length   206 a.a.
NCBI ID   WP_041807539.1    Uniprot ID   -
Organism   Azotobacter vinelandii CA     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2355054..2365674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVCA_RS10715 (AvCA_23530) cysS 2355576..2356961 (+) 1386 WP_012700939.1 cysteine--tRNA ligase -
  AVCA_RS10720 (AvCA_23540) folD 2357053..2357907 (-) 855 WP_012700940.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  AVCA_RS10740 (AvCA_23550) tig 2358639..2359949 (+) 1311 WP_012700941.1 trigger factor -
  AVCA_RS10745 (AvCA_23570) clpP 2360054..2360674 (+) 621 WP_041807539.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  AVCA_RS10750 (AvCA_23580) clpX 2360777..2362057 (+) 1281 WP_012700944.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  AVCA_RS10755 (AvCA_23590) lon 2362187..2364580 (+) 2394 WP_012700945.1 endopeptidase La -
  AVCA_RS10760 (AvCA_23600) hupB 2364716..2364988 (+) 273 WP_012700946.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22867.47 Da        Isoelectric Point: 6.1392

>NTDB_id=48353 AVCA_RS10745 WP_041807539.1 2360054..2360674(+) (clpP) [Azotobacter vinelandii CA]
MQMPEIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFMVGQVEDYMANLIVAQLLFLEAENPDKDIHLYINSPGGSV
TAGMSIYDTMQFIKPDVSTICIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAREILTIRERLN
KILAHHTGQPIDVIARDTDRDNFMSGEEAVKYRLIDQVLVHRQLVS

Nucleotide


Download         Length: 621 bp        

>NTDB_id=48353 AVCA_RS10745 WP_041807539.1 2360054..2360674(+) (clpP) [Azotobacter vinelandii CA]
ATGCAAATGCCTGAAATCCAGGCCGCTGGTGGCCTGGTACCGATGGTGATCGAACAGTCCGCTCGCGGTGAGCGTGCTTA
CGATATTTATTCGCGTCTCTTGAAGGAGCGAGTAATATTCATGGTTGGCCAAGTAGAAGACTACATGGCGAACTTGATTG
TCGCTCAGTTGTTGTTCCTTGAGGCCGAGAATCCCGACAAGGATATTCACCTTTACATCAATTCGCCTGGTGGCTCCGTG
ACGGCAGGCATGTCCATCTACGACACCATGCAGTTCATCAAGCCTGACGTTTCCACCATTTGTATTGGCCAGGCCTGCAG
CATGGGAGCCTTGTTGCTGGCCGGTGGCGCCGCCGGAAAGCGTTACTGCCTCCCGCATTCGCGGATGATGATTCACCAGC
CTTTGGGGGGGTTCCAGGGGCAGGCTTCGGACATCGAGATCCACGCCCGGGAGATTCTCACCATTCGCGAGCGTCTGAAC
AAGATTCTGGCGCATCACACTGGGCAGCCCATCGATGTGATCGCTCGTGACACGGATCGTGACAATTTCATGAGTGGTGA
GGAAGCGGTCAAGTATCGCCTCATCGATCAGGTTCTCGTGCACCGCCAACTGGTGAGTTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(22-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.229

93.204

0.636
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

91.262

0.602
  clpP Lactococcus lactis subsp. cremoris KW2

52.792

95.631

0.505
  clpP Streptococcus mutans UA159

50.99

98.058

0.5
  clpP Streptococcus pyogenes MGAS315

51.795

94.66

0.49
  clpP Streptococcus thermophilus LMG 18311

51.795

94.66

0.49
  clpP Streptococcus thermophilus LMD-9

51.795

94.66

0.49
  clpP Streptococcus pyogenes JRS4

51.795

94.66

0.49
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.269

95.631

0.49
  clpP Streptococcus pneumoniae TIGR4

51.282

94.66

0.485
  clpP Streptococcus pneumoniae R6

51.282

94.66

0.485
  clpP Streptococcus pneumoniae D39

51.282

94.66

0.485
  clpP Streptococcus pneumoniae Rx1

51.282

94.66

0.485

Multiple sequence alignment