Detailed information NTG0048354

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AVCA_RS10750
• Genome accession: NC_021149
• Coordinates: 2360777..2362057 (+)
• Length: 426 a.a.
• NCBI ID: WP_012700944.1
• Uniprot ID: C1DHF1
• Organism: Azotobacter vinelandii CA
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2355777..2367057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVCA_RS10720 (AvCA_23540)	folD	2357053..2357907 (-)	855	WP_012700940.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-
AVCA_RS10740 (AvCA_23550)	tig	2358639..2359949 (+)	1311	WP_012700941.1	trigger factor	-
AVCA_RS10745 (AvCA_23570)	clpP	2360054..2360674 (+)	621	WP_041807539.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
AVCA_RS10750 (AvCA_23580)	clpX	2360777..2362057 (+)	1281	WP_012700944.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AVCA_RS10755 (AvCA_23590)	lon	2362187..2364580 (+)	2394	WP_012700945.1	endopeptidase La	-
AVCA_RS10760 (AvCA_23600)	hupB	2364716..2364988 (+)	273	WP_012700946.1	nucleoid-associated protein HU-beta	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 46554.30 Da
• Isoelectric Point: 4.8143

>NTDB_id=48354 AVCA_RS10750 WP_012700944.1 2360777..2362057(+) (clpX) [Azotobacter vinelandii CA]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSAHKLPAPKEISTILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKDDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDVE
NIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQVD
TRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSPDVGKKIGEALRDVEPDDLVKFGLIPEFVGRLPVIATLDELDEA
ALVQILTEPKNALTKQYGKLFEMEGVELEFRPDALRAVALRALERKTGARGLRSILEGVLLDTMYEIPSQSGVSKVVIDE
SVIAGASKPLLIYENVEPPAKAAPDA

Nucleotide

• Length: 1281 bp

>NTDB_id=48354 AVCA_RS10750 WP_012700944.1 2360777..2362057(+) (clpX) [Azotobacter vinelandii CA]
ATGACTGACACCCGTAACGGCGAGGACAATGGCAAACTGCTTTACTGCTCCTTCTGCGGCAAGAGCCAGCATGAGGTACG
CAAGCTGATTGCCGGCCCCTCGGTCTTTATTTGTGACGAGTGCGTCGACCTGTGCAACGACATTATCCGAGAGGAAGTGC
AAGAAGCTCAGGCCGAAAGCAGTGCGCATAAGCTACCCGCACCCAAGGAAATCAGTACCATTCTTGACCAGTATGTCATT
GGTCAGGAGCGTGCCAAGAAGGTCTTGGCTGTGGCGGTGTACAACCACTACAAGCGCCTGAACCAGCGTGACAAGAAGGA
TGATGTCGAGCTGGGCAAGAGCAATATCCTGTTGATCGGCCCAACTGGCTCGGGCAAGACTTTGCTGGCTGAAACCTTGG
CCCGTCTATTGAATGTTCCTTTTACCATCGCCGACGCGACTACTCTGACCGAGGCAGGTTATGTTGGCGAGGATGTCGAG
AACATCATTCAGAAGCTATTGCAGAAATGCGACTATGATGTCGAGAAAGCCCAGATGGGTATCGTCTACATTGACGAAAT
CGACAAGATTTCGCGCAAATCCGATAATCCGTCGATTACGCGGGATGTATCGGGCGAGGGCGTCCAGCAAGCTCTGCTCA
AGCTGATCGAGGGAACGGTAGCTTCCGTTCCGCCGCAGGGTGGGCGCAAGCATCCGCAGCAGGAGTTCCTGCAGGTGGAT
ACTCGCAACATTCTCTTTATTTGTGGCGGCGCCTTTTCCGGTTTGGAAAAGGTGATCCAGAACCGCTCGACGAAGGGGGG
GATCGGCTTCAATGCCGAGGTACGAAGCCCGGATGTTGGCAAGAAAATCGGCGAGGCTCTACGCGATGTGGAGCCGGATG
ATCTGGTCAAGTTCGGTCTGATACCGGAGTTCGTAGGGCGTTTACCCGTCATCGCCACGCTTGACGAGTTGGATGAGGCG
GCCTTGGTGCAGATCCTCACGGAGCCCAAGAATGCCTTGACCAAGCAGTACGGCAAGCTGTTCGAGATGGAAGGGGTGGA
GCTTGAATTCCGTCCCGATGCATTGCGAGCCGTGGCCTTGCGCGCACTTGAGCGAAAGACCGGGGCGCGTGGATTGCGCT
CCATTCTCGAGGGTGTTCTGCTGGATACCATGTATGAGATTCCCTCGCAATCTGGTGTCAGCAAGGTGGTTATCGATGAG
AGTGTCATCGCTGGTGCTTCCAAGCCCCTACTGATCTATGAAAACGTGGAGCCGCCTGCCAAGGCCGCACCTGATGCTTG
A

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• AAA domain (Cdc48 subfamily) (AAA_2) (113-311)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-393)

3D structure

• AlphaFold DB: C1DHF1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	61.139	94.836	0.58
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.683	94.836	0.538