Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   IC788_RS01520 Genome accession   NZ_CP061596
Coordinates   320184..322337 (+) Length   717 a.a.
NCBI ID   WP_191001029.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain AS59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 315184..327337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS01500 (IC788_01500) pilM 317145..318203 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC788_RS01505 (IC788_01505) pilN 318203..318847 (+) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  IC788_RS01510 (IC788_01510) pilO 318844..319584 (+) 741 WP_134262501.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC788_RS01515 (IC788_01515) pilP 319595..320122 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC788_RS01520 (IC788_01520) pilQ 320184..322337 (+) 2154 WP_191001029.1 type IV pilus secretin PilQ family protein Machinery gene
  IC788_RS01525 (IC788_01525) aroK 322349..322918 (+) 570 WP_004705195.1 shikimate kinase AroK -
  IC788_RS01530 (IC788_01530) aroB 322947..324029 (+) 1083 WP_134262497.1 3-dehydroquinate synthase -
  IC788_RS01535 (IC788_01535) - 324045..324919 (+) 875 Protein_294 hypothetical protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 77223.48 Da        Isoelectric Point: 6.7672

>NTDB_id=483425 IC788_RS01520 WP_191001029.1 320184..322337(+) (pilQ) [Acinetobacter seifertii strain AS59]
MNQVFRQFSMGAVAIAIMQAASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDVRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTTNKPIPAATVQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPTHLARRLNVNDFATPVSSIDAYNDKGVGVITIQSAGSYEYMAYQAENKLTI
SLKRPQDKNLTSLYKTQNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAKAGDIMGLITQGSNNSNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVKVKQVMVEARIVRASTSFTKELGVKWGIL
SQGVNSNNSLLVGGSETTLWNLKNPDSNGKYTIERPDNLNVDLGVTSAGASSIAFSLISMSDFMLDLELSALQADGYGEV
ISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTASTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPNGELI
LNKNNINTNVLVDNGETVILGGVFEQTTTNSQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=483425 IC788_RS01520 WP_191001029.1 320184..322337(+) (pilQ) [Acinetobacter seifertii strain AS59]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAACCCTTCGCGTTTAATACTAGATTTTGATAAGGCGCAACAAAGTTTAAAGCAGTCTAAAATT
GCTGTTGCAACGAATGAAGCAAGTTCCGTTGATGTGACTTCAGATGATGTGCGTTCACGCTTAACTGTAAATCTAAAAGA
TGCTGGTGCTTTTACAACGCGCGTGGAAGGCAATACTTTCATTCTAAAAATTAATTCAGCTCAAACAACGAATAAGCCGA
TACCAGCAGCTACCGTACAACCACAAGGTGTTTCAAATATTGGCTTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTCGATCTTTTGGGAAGTAATACGCCTGTAGATGTTCAACAACAAGGCAGTAAAGTTGTTATAAGAACATTAGGTACAAA
GATTCCGACACATTTAGCACGTCGTTTAAATGTAAATGATTTTGCAACGCCAGTTTCAAGTATAGATGCTTATAATGACA
AAGGTGTTGGTGTAATCACAATTCAGTCAGCTGGTAGTTATGAATATATGGCGTATCAGGCTGAAAATAAGTTAACTATT
AGCCTTAAACGCCCTCAAGATAAAAATTTAACGTCTTTATATAAAACACAAAATTATTCTGGAAATAAGCTTTCGTTAGA
TTTTCAAGATATTGAAGTGCGTCGTGTTTTACAGCTTCTTGCTGATTTTACAGGCATCAATATGGTAGCTGCTGATAGTG
TGCAAGGTAACATCACGCTACGTTTGAAAGATGTACCTTGGGATCAAGCACTAGATATTATTTTAAAAACTAAAAATCTT
GATAAACGCCGTAATGGAAATGTAATTTGGATTGCTCCAGTTGCAGAACTAATTAAGGCAGAAGAGGAAGAGGCGAAGGC
TGTTGCACAAAGTGTCAAACTTGCTCCATTACAAACCGAATATATCCAGCTTAAATATGCTAAAGCTGGCGATATTATGG
GTTTGATTACTCAAGGCTCAAATAATAGTAATGGTTTACAGCATACGTCAGGTGGAGGTACATCAACCTCAACTAATTTA
AATACTGGAGTTGATAGTCTGGGTAATAATGTGGGAAGTTTACTTAGTCCACGTGGTACGATTACTCAAGATGACCGTAC
TAATACTTTAATTATTAACGATACGGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATTTGCTTGATGTAAAAGTTA
AGCAGGTGATGGTTGAAGCACGTATTGTGAGAGCCTCTACTTCATTTACCAAAGAACTTGGCGTTAAGTGGGGAATATTA
TCGCAAGGGGTGAACAGTAATAACAGTTTGTTGGTGGGTGGTAGTGAAACAACTTTATGGAACCTAAAAAATCCTGATAG
TAATGGAAAATATACAATTGAACGACCAGATAATTTAAATGTTGATTTGGGCGTTACGTCGGCTGGAGCTAGTAGCATAG
CTTTTAGTTTAATTAGTATGTCAGACTTCATGTTGGATTTAGAGTTATCAGCATTGCAGGCTGATGGTTATGGTGAAGTA
ATTTCAACTCCTAAAGTGATGACTGCCGATAAACAAACTGCAAAAGTTGCCACGGGTCAACAAGTTCCATATCAGACTAC
AACAAACTCAGCTGCAGGCTCAACAGCATCAACTTCTTTTAAAGATGCATTGCTAAGCTTAAATGTGACTCCAAGTATTA
CGCCTGACGGTAAAATTCAAATGAAGTTGGATATTTCTAAGGACTCTGTAGCAGGTGCAGCCCCAAATGGTGAATTAATT
CTGAATAAGAATAATATTAATACCAATGTGCTGGTTGATAATGGAGAAACCGTTATTTTAGGTGGTGTATTCGAGCAAAC
AACGACGAACTCTCAAACTAAAGTTCCGTTCTTTGGTGATATTCCTTTGGTTGGGCGTTTATTTAGAAAAGATGTAAAGT
CTGATGATAAACAAGAGTTACTGATTTTCGTAACACCACGAATTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(39-121)

Bacterial type II and III secretion system protein (Secretin)

(551-709)

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

94.321

100

0.95
  pilQ Acinetobacter baumannii strain A118

94.183

100

0.948
  comQ Acinetobacter baylyi ADP1

76.462

100

0.766
  pilQ Pseudomonas aeruginosa PAK

39.752

100

0.403