Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   IC788_RS01505 Genome accession   NZ_CP061596
Coordinates   318203..318847 (+) Length   214 a.a.
NCBI ID   WP_077163636.1    Uniprot ID   A0A2M8MMB9
Organism   Acinetobacter seifertii strain AS59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313203..323847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS01485 (IC788_01485) - 313251..313583 (+) 333 WP_134262507.1 hypothetical protein -
  IC788_RS01490 (IC788_01490) - 313586..314410 (+) 825 WP_191001028.1 putative RNA methyltransferase -
  IC788_RS01495 (IC788_01495) ponA 314428..316983 (-) 2556 WP_134262504.1 penicillin-binding protein PBP1a -
  IC788_RS01500 (IC788_01500) pilM 317145..318203 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC788_RS01505 (IC788_01505) pilN 318203..318847 (+) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  IC788_RS01510 (IC788_01510) pilO 318844..319584 (+) 741 WP_134262501.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC788_RS01515 (IC788_01515) pilP 319595..320122 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC788_RS01520 (IC788_01520) pilQ 320184..322337 (+) 2154 WP_191001029.1 type IV pilus secretin PilQ family protein Machinery gene
  IC788_RS01525 (IC788_01525) aroK 322349..322918 (+) 570 WP_004705195.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24113.45 Da        Isoelectric Point: 5.1326

>NTDB_id=483422 IC788_RS01505 WP_077163636.1 318203..318847(+) (pilN) [Acinetobacter seifertii strain AS59]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQDLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEDKKDKAASSLLPRVEDNYGSFVVTVDLGEMGVTTADNNADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=483422 IC788_RS01505 WP_077163636.1 318203..318847(+) (pilN) [Acinetobacter seifertii strain AS59]
ATGGCAACAATTAATTTACTACCTTGGCGTGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGCTTTGG
GGTGGTTGTGTTAGGAATTACAACCGTATTTGGAGGGTGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ATCAACTTATTACAAGTACTAATCAAAACCTTGATCAGCAATTAAAAGCATTAAATGGTTTACAAGAACAACGTGATGCC
ATCATTGAGCGTATGAAATTGATTCAAGATTTACAGAGTCAGCGTCCAGTCGTAGTAAGACTGGTTGATGAGTTAGTAAG
AGTCACGCCGCCTGCAATGTATTTAACGAAATTTAGCCGAACTGGGGATAAATTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTAGCTGAACTACTGCGTAATCTTGAAGCATCTCCTTGGTATCGAAATGCTTTTATGAACTCTTTCTTGGCT
ACTGAAGATAAAAAAGATAAGGCAGCAAGTTCTCTTCTTCCTAGGGTAGAAGATAATTACGGTAGTTTTGTTGTGACTGT
CGATTTAGGGGAAATGGGCGTGACCACAGCTGATAATAATGCTGATAAACCAGCCGTAGCTAAAGATACGGGGGCAGCAA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2M8MMB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

92.056

100

0.921
  comN Acinetobacter baylyi ADP1

70.616

98.598

0.696