Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IC788_RS01515 Genome accession   NZ_CP061596
Coordinates   319595..320122 (+) Length   175 a.a.
NCBI ID   WP_004705193.1    Uniprot ID   N8SH39
Organism   Acinetobacter seifertii strain AS59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 314595..325122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS01500 (IC788_01500) pilM 317145..318203 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC788_RS01505 (IC788_01505) pilN 318203..318847 (+) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  IC788_RS01510 (IC788_01510) pilO 318844..319584 (+) 741 WP_134262501.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC788_RS01515 (IC788_01515) pilP 319595..320122 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC788_RS01520 (IC788_01520) pilQ 320184..322337 (+) 2154 WP_191001029.1 type IV pilus secretin PilQ family protein Machinery gene
  IC788_RS01525 (IC788_01525) aroK 322349..322918 (+) 570 WP_004705195.1 shikimate kinase AroK -
  IC788_RS01530 (IC788_01530) aroB 322947..324029 (+) 1083 WP_134262497.1 3-dehydroquinate synthase -
  IC788_RS01535 (IC788_01535) - 324045..324919 (+) 875 Protein_294 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19340.53 Da        Isoelectric Point: 9.4007

>NTDB_id=483424 IC788_RS01515 WP_004705193.1 319595..320122(+) (pilP) [Acinetobacter seifertii strain AS59]
MKIKQITLYILACAALVGCDSRIDAVNQQMANIRNQPPLAIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRTPQPLESYALEALSMKGSMRNSRGQILALIQTPDHQVERVQVGNYMGMNQGRITQISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=483424 IC788_RS01515 WP_004705193.1 319595..320122(+) (pilP) [Acinetobacter seifertii strain AS59]
ATGAAAATTAAGCAAATTACTCTTTATATTTTGGCTTGTGCTGCTCTTGTAGGATGTGATTCAAGAATTGATGCAGTCAA
TCAGCAAATGGCAAATATCCGTAATCAACCGCCGCTAGCTATCGAACCAGCACCTATTTTTACTCCTGTACCACAATTTA
ATTATGCTGCTCATCAATTAAAAAGTCCATTTATGCCAAGCTCACTGGCTGCTGAACTCAAAATTATGGCTGGAAAACGT
GTTTATCCAAATTTCTCACGTACACCACAGCCATTAGAAAGTTATGCACTTGAGGCTTTAAGTATGAAAGGAAGCATGCG
CAATAGCCGTGGTCAAATATTAGCTCTCATCCAGACACCAGATCATCAAGTTGAACGGGTACAAGTGGGCAATTATATGG
GCATGAATCAGGGCCGTATTACCCAGATTAGTCCGACTCAGATTGATTTGGTCGAGATCGTGCCAGATGGTCGAGAAGGC
TATGTTGAAAGACCGAGAACATTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SH39

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

94.286

100

0.943
  comL Acinetobacter baylyi ADP1

70.69

99.429

0.703