Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   IC788_RS01510 Genome accession   NZ_CP061596
Coordinates   318844..319584 (+) Length   246 a.a.
NCBI ID   WP_134262501.1    Uniprot ID   A0A5E9PF12
Organism   Acinetobacter seifertii strain AS59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313844..324584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC788_RS01495 (IC788_01495) ponA 314428..316983 (-) 2556 WP_134262504.1 penicillin-binding protein PBP1a -
  IC788_RS01500 (IC788_01500) pilM 317145..318203 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  IC788_RS01505 (IC788_01505) pilN 318203..318847 (+) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  IC788_RS01510 (IC788_01510) pilO 318844..319584 (+) 741 WP_134262501.1 type 4a pilus biogenesis protein PilO Machinery gene
  IC788_RS01515 (IC788_01515) pilP 319595..320122 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  IC788_RS01520 (IC788_01520) pilQ 320184..322337 (+) 2154 WP_191001029.1 type IV pilus secretin PilQ family protein Machinery gene
  IC788_RS01525 (IC788_01525) aroK 322349..322918 (+) 570 WP_004705195.1 shikimate kinase AroK -
  IC788_RS01530 (IC788_01530) aroB 322947..324029 (+) 1083 WP_134262497.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27848.54 Da        Isoelectric Point: 5.1340

>NTDB_id=483423 IC788_RS01510 WP_134262501.1 318844..319584(+) (pilO) [Acinetobacter seifertii strain AS59]
MSQDELHELSLEQSASKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFVAIQPKLQAIDNAQAQE
TNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEVFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDSKSDIPVLNYSIKAKTYRYVEATDTAKQSTQSPTTPASTS
TTAQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=483423 IC788_RS01510 WP_134262501.1 318844..319584(+) (pilO) [Acinetobacter seifertii strain AS59]
ATGAGTCAAGATGAACTTCACGAGTTATCATTAGAGCAATCGGCTTCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAACAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCCATATCTGTAAAAATTACTTGCTGGATTTTTATTT
TCTTTGCTGTATTAGCCTTGGGTTATTTTGTTGCTATTCAGCCAAAGCTACAAGCAATTGATAATGCTCAAGCTCAGGAA
ACTAACTTGTTAAACGAATTTCGAGAAAAAGATTCGAAATTACGTAATTTGCAACAGTATCAAGTCCAACTTCAAGAGAT
GCAGGCAAATTTTAATCAGCAATTAGAGCAGTTGCCTAAAGAAACCGAGATTCCTAGTTTGGTTGAAGACATTAATTTAA
CAGGTGTGAACTCAGGATTAAAATTTAAAAATATTCGCTTGGAGAATGAAGTAAAACAGGAAGTCTTTATTGAACAACCG
ATTGCGATAGAAGCCACAGGTGATTATCACGCTTTTGGAGCTTTTGTGAGTAGTATTGCTGCGTTGCCACGTATCGTAAC
CATGCACGACTTTACCGTTGATGTATCTCCAGCGAAAGACAGCAAGTCAGATATTCCTGTATTGAACTATTCTATCAAAG
CGAAAACCTATCGCTATGTAGAAGCAACAGATACAGCGAAGCAATCGACCCAATCTCCAACAACACCTGCTTCAACTAGC
ACTACTGCTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5E9PF12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

91.057

100

0.911
  comO Acinetobacter baylyi ADP1

68.98

99.593

0.687