Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   IC806_RS17210 Genome accession   NZ_CP061471
Coordinates   3411046..3412290 (+) Length   414 a.a.
NCBI ID   WP_081132757.1    Uniprot ID   A0A1V9C418
Organism   Geobacillus zalihae strain SURF-114     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3406046..3417290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IC806_RS17180 (IC806_17175) yfmH 3406145..3407434 (+) 1290 WP_015374445.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  IC806_RS17185 (IC806_17180) ymfI 3407489..3408205 (+) 717 WP_015374446.1 elongation factor P 5-aminopentanone reductase -
  IC806_RS17190 (IC806_17185) - 3408268..3408516 (+) 249 WP_011230790.1 DUF3243 domain-containing protein -
  IC806_RS17195 (IC806_17190) - 3408648..3409439 (+) 792 WP_015374447.1 DUF3388 domain-containing protein -
  IC806_RS17200 (IC806_17195) - 3409467..3410360 (+) 894 WP_020756924.1 RodZ domain-containing protein -
  IC806_RS17205 (IC806_17200) pgsA 3410441..3411019 (+) 579 WP_011230793.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IC806_RS17210 (IC806_17205) cinA 3411046..3412290 (+) 1245 WP_081132757.1 competence/damage-inducible protein A Machinery gene
  IC806_RS17215 (IC806_17210) - 3412468..3412755 (+) 288 Protein_3408 DNA recombination/repair protein RecA -
  IC806_RS17220 (IC806_17215) - 3413720..3413863 (+) 144 Protein_3409 recombinase RecA -
  IC806_RS17225 (IC806_17220) - 3414574..3416481 (+) 1908 WP_081132758.1 reverse transcriptase domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44816.53 Da        Isoelectric Point: 6.0113

>NTDB_id=482448 IC806_RS17210 WP_081132757.1 3411046..3412290(+) (cinA) [Geobacillus zalihae strain SURF-114]
MNAEIIAVGSELLLGQIANTNAQFLSQQLAMLGINVYFHTVVGDNAGRLEQAVKTAQTRANLIIFTGGLGPTKDDLTKET
IARLLGRRLVIDEEALRAIEAYFARTNRPMTENNKKQALVLEGSTVLKNEHGMAPGMALVADGITYMLLPGPPKEMRPMF
KKYGNAFLRRTFSLSERIESRVLRFFGIGESALETAIADLIDAQSNPTIAPLAGDGEVTLRLTAKHQDEAEAKRLLDEVE
SAILARVGRHCYGYNDETLFTKTLERLKERGWTIASAESLTGGLFLEQLTALPGASQVVQGGVVCYTNGVKEQVLGIPRT
LLEAEGAVSEPCARLLAENVRAMCDADIGISFTGVAGPDPLEGHPPGTVYIGIAVRGRDATVHRLTLSGTRDAIRIRTAK
YGCFFLLEMLAADC

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=482448 IC806_RS17210 WP_081132757.1 3411046..3412290(+) (cinA) [Geobacillus zalihae strain SURF-114]
TTGAACGCGGAGATCATTGCCGTTGGCTCCGAGCTGTTGCTTGGGCAAATCGCCAATACGAACGCCCAGTTTTTGTCGCA
GCAGCTGGCGATGCTTGGCATTAACGTCTATTTCCATACCGTCGTCGGCGACAACGCCGGCCGCCTCGAACAGGCGGTGA
AAACGGCGCAAACGAGAGCGAACCTCATCATTTTCACCGGCGGCCTCGGCCCGACGAAAGACGATTTAACGAAGGAGACG
ATCGCCCGTTTGCTTGGCCGCCGACTCGTGATCGACGAGGAAGCGCTCCGAGCGATTGAGGCGTATTTTGCCCGCACAAA
CCGGCCGATGACAGAAAACAATAAAAAGCAGGCGCTCGTCTTGGAAGGATCGACGGTGCTGAAAAACGAGCACGGCATGG
CGCCAGGGATGGCGCTTGTGGCAGACGGCATTACGTACATGTTGCTGCCCGGGCCGCCGAAAGAAATGCGGCCGATGTTC
AAAAAATACGGAAACGCCTTTTTGCGCCGTACGTTTTCGCTTTCCGAGCGCATCGAGTCGCGCGTGCTCCGCTTTTTTGG
CATCGGTGAATCAGCGCTCGAGACGGCGATTGCGGATTTGATCGACGCCCAGTCGAATCCGACGATCGCGCCGCTGGCCG
GCGACGGTGAAGTGACGCTTCGTCTGACAGCGAAGCATCAGGATGAGGCGGAGGCGAAGCGGCTTCTTGACGAAGTGGAA
TCGGCCATTTTGGCGCGTGTCGGCCGCCACTGCTACGGATATAACGATGAAACGTTGTTTACAAAGACGCTCGAGCGGTT
AAAAGAAAGAGGATGGACGATCGCGTCGGCCGAAAGTTTGACCGGCGGCCTTTTCCTCGAACAGCTCACCGCCCTCCCCG
GCGCGTCGCAAGTCGTGCAGGGCGGTGTCGTCTGCTACACAAACGGCGTCAAAGAACAGGTGCTTGGCATACCGCGCACG
CTGCTTGAGGCAGAAGGGGCGGTGAGCGAGCCGTGCGCCCGTTTGCTTGCTGAAAACGTCCGCGCGATGTGCGATGCGGA
TATCGGCATCAGCTTCACCGGCGTCGCCGGACCCGATCCGCTTGAGGGCCACCCGCCCGGCACCGTGTATATCGGCATCG
CCGTCCGCGGGCGCGATGCAACTGTCCACCGTCTGACGCTGTCCGGCACGCGTGATGCCATTCGCATCCGCACCGCCAAA
TACGGCTGTTTTTTTCTGCTTGAGATGCTCGCGGCCGACTGCTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V9C418

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.658

98.792

0.589
  cinA Streptococcus mitis SK321

50.653

92.512

0.469
  cinA Streptococcus mitis NCTC 12261

50.653

92.512

0.469
  cinA Streptococcus pneumoniae TIGR4

50.392

92.512

0.466
  cinA Streptococcus pneumoniae Rx1

50.392

92.512

0.466
  cinA Streptococcus pneumoniae R6

50.392

92.512

0.466
  cinA Streptococcus pneumoniae D39

50.131

92.512

0.464
  cinA Streptococcus mutans UA159

47.87

96.377

0.461
  cinA Streptococcus suis isolate S10

42.593

91.304

0.389