NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	AT6N2_RS04280	Genome accession	NZ_CP072308
Coordinates	853435..854067 (-)	Length	210 a.a.
NCBI ID	WP_003521529.1	Uniprot ID	A0A822V5P2
Organism	Agrobacterium tumefaciens strain 6N2
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 848435..859067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AT6N2_RS04265 (AT6N2_C1057)	hupB	848471..848746 (-)	276	WP_003502360.1	DNA-binding protein HupB	-
AT6N2_RS04270 (AT6N2_C1058)	lon	849037..851454 (-)	2418	WP_004441301.1	endopeptidase La	-
AT6N2_RS04275 (AT6N2_C1060)	clpX	851865..853142 (-)	1278	WP_063951205.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AT6N2_RS04280 (AT6N2_C1062)	clpP	853435..854067 (-)	633	WP_003521529.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
AT6N2_RS04285 (AT6N2_C1064)	-	854515..855762 (+)	1248	WP_209088728.1	GGDEF domain-containing protein	-
AT6N2_RS04290 (AT6N2_C1065)	-	855853..857100 (+)	1248	WP_209088731.1	cytochrome P450	-
AT6N2_RS04295 (AT6N2_C1066)	-	857122..857892 (-)	771	WP_172801658.1	SDR family oxidoreductase	-
AT6N2_RS04300 (AT6N2_C1067)	-	857982..858296 (+)	315	WP_063951209.1	helix-turn-helix domain-containing protein	-
AT6N2_RS04305 (AT6N2_C1068)	-	858318..858662 (-)	345	WP_209088734.1	cupin domain-containing protein	-

Sequence

Protein

Download Length: 210 a.a. Molecular weight: 23254.80 Da Isoelectric Point: 6.1201

                                >NTDB_id=481848 AT6N2_RS04280 WP_003521529.1 853435..854067(-) (clpP) [Agrobacterium tumefaciens strain 6N2]

MKNPVDTAMALVPMVVEQTNRGERSYDIFSRLLKERIIFLTGPVEDQMASLVCAQLLFLEAENPKKEIALYINSPGGVVT

AGMAIYDTMQFIRPAVSTLCVGQAASMGSLLLAAGEKGMRFATPNARIMVHQPSGGFQGQASDIERHARDIIKMKRRLNE

VYVKHTGRTLEEVEKTLDRDHFMDADEAKDWGVIDKILTSRQEIEGAAAN

Nucleotide

Download Length: 633 bp

                                >NTDB_id=481848 AT6N2_RS04280 WP_003521529.1 853435..854067(-) (clpP) [Agrobacterium tumefaciens strain 6N2]

ATGAAAAATCCAGTTGATACCGCCATGGCTCTGGTGCCGATGGTCGTTGAGCAGACCAATCGCGGCGAACGCTCCTACGA

CATATTTTCCCGTCTTCTCAAGGAACGCATCATTTTCCTCACCGGTCCGGTGGAAGACCAGATGGCGTCGCTCGTCTGCG

CCCAGTTGCTTTTCCTCGAGGCTGAAAACCCGAAGAAGGAAATTGCGCTCTACATCAATTCGCCAGGTGGCGTCGTGACC

GCCGGCATGGCGATCTACGATACGATGCAGTTCATCCGTCCTGCGGTCTCGACGCTCTGCGTCGGCCAGGCCGCATCCAT

GGGCTCGCTGCTTCTGGCCGCCGGTGAAAAGGGAATGCGTTTCGCAACCCCGAACGCCCGCATCATGGTGCACCAGCCGT

CTGGCGGCTTCCAGGGCCAGGCCTCGGATATCGAACGCCATGCCCGCGACATCATCAAGATGAAGCGCCGTCTGAATGAA

GTCTATGTGAAGCACACTGGCCGCACGCTCGAAGAGGTTGAAAAAACCCTTGATCGCGACCATTTCATGGATGCAGACGA

GGCGAAAGACTGGGGCGTGATCGACAAGATCCTGACGTCGCGCCAGGAAATCGAAGGCGCCGCCGCGAATTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-200)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A822V5P2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	60	92.857	0.557
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.915	89.524	0.51
clpP	Lactococcus lactis subsp. cremoris KW2	52.105	90.476	0.471
clpP	Streptococcus mutans UA159	49.231	92.857	0.457
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.526	90.476	0.457
clpP	Streptococcus pyogenes JRS4	48.969	92.381	0.452
clpP	Streptococcus pyogenes MGAS315	48.969	92.381	0.452
clpP	Streptococcus thermophilus LMG 18311	48.454	92.381	0.448
clpP	Streptococcus thermophilus LMD-9	48.454	92.381	0.448
clpP	Streptococcus pneumoniae Rx1	48.705	91.905	0.448
clpP	Streptococcus pneumoniae D39	48.705	91.905	0.448
clpP	Streptococcus pneumoniae R6	48.705	91.905	0.448
clpP	Streptococcus pneumoniae TIGR4	48.705	91.905	0.448

Detailed information NTG0481848