Detailed information NTG0481847

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: AT6N2_RS04275
• Genome accession: NZ_CP072308
• Coordinates: 851865..853142 (-)
• Length: 425 a.a.
• NCBI ID: WP_063951205.1
• Uniprot ID: A0A1S9EZS1
• Organism: Agrobacterium tumefaciens strain 6N2
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 846865..858142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AT6N2_RS04265 (AT6N2_C1057)	hupB	848471..848746 (-)	276	WP_003502360.1	DNA-binding protein HupB	-
AT6N2_RS04270 (AT6N2_C1058)	lon	849037..851454 (-)	2418	WP_004441301.1	endopeptidase La	-
AT6N2_RS04275 (AT6N2_C1060)	clpX	851865..853142 (-)	1278	WP_063951205.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
AT6N2_RS04280 (AT6N2_C1062)	clpP	853435..854067 (-)	633	WP_003521529.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
AT6N2_RS04285 (AT6N2_C1064)	-	854515..855762 (+)	1248	WP_209088728.1	GGDEF domain-containing protein	-
AT6N2_RS04290 (AT6N2_C1065)	-	855853..857100 (+)	1248	WP_209088731.1	cytochrome P450	-
AT6N2_RS04295 (AT6N2_C1066)	-	857122..857892 (-)	771	WP_172801658.1	SDR family oxidoreductase	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46912.83 Da
• Isoelectric Point: 5.0063

>NTDB_id=481847 AT6N2_RS04275 WP_063951205.1 851865..853142(-) (clpX) [Agrobacterium tumefaciens strain 6N2]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARKAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISD
EVVSGVARPLYIYADRQEEKTNVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=481847 AT6N2_RS04275 WP_063951205.1 851865..853142(-) (clpX) [Agrobacterium tumefaciens strain 6N2]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGACCGACGGTGTTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGCGAGG
AGAACAAGACGTCGATGGTGAAGTCGCGCGAGGGTGTACCCACCCCGCAGGACATCATCAAGATCCTCGACGAATACGTC
ATCGGCCAGAAGCAGGCGAAGAAGATCCTGTCCGTGGCCGTTCACAACCACTACAAGCGCCTCGCGCACGCCTCCAAGAA
TGGCGATGTCGAGCTTGCGAAGTCGAACATTATGCTCGTCGGCCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACCATGGCGGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGGCAGCGGATTACAATGTCGAGCGCGCTCAGCGCGGCATCGTCTATATCGACGA
AGTCGACAAGATTTCCCGCAAGTCGGACAACCCTTCCATCACGCGCGACGTGTCGGGCGAGGGCGTTCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGTGGACGCAAGCATCCGCAGCAGGAGTTCCTGCAGGTG
GATACGACCAACATCCTGTTCATCTGCGGCGGCGCCTTTGCCGGCCTCGACAAGATCATCTCGGCCCGTGGCGAAAAGAC
CTCGATCGGCTTCGGTGCGACCGTCAAGGCGGAAGACGACCGGCGTGTGGGCGAAGTGCTGCGCGAGCTGGAGCCGGAAG
ATCTGGTGAAGTTCGGCCTCATTCCGGAATTCATTGGCCGTCTGCCCGTTCTGGCGACGCTGGAAGACCTGGATGAAGAT
GCGCTGATCCAGATCCTGTCCGAGCCGAAGAACGCTCTGGTCAAGCAGTATCAGCGCCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCGCTGCGCGAAATCGCCCGCAAGGCGATCACCCGCAAGACCGGTGCCCGTGGCCTGCGCT
CGATCATGGAAAAGATCCTGCTGGACACCATGTTCGAACTGCCGACGCTGGAAGGCGTACGCGAGGTCGTCATTTCCGAC
GAGGTCGTCAGCGGTGTCGCCCGTCCGCTCTACATCTATGCGGACCGTCAGGAAGAAAAGACCAACGTTTCGGCCTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

3D structure

• AlphaFold DB: A0A1S9EZS1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.907	93.882	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.583	94.824	0.527