Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB/cglB   Type   Machinery gene
Locus tag   D39N_RS09315 Genome accession   NZ_CP061208
Coordinates   1841541..1842557 (-) Length   338 a.a.
NCBI ID   WP_074196785.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain D39_P0     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1836541..1847557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D39N_RS10860 - 1836618..1836749 (-) 132 WP_000768904.1 hypothetical protein -
  D39N_RS09275 (D39N_01861) - 1836750..1837940 (-) 1191 WP_000167757.1 acetate kinase -
  D39N_RS09280 (D39N_01862) comYH 1837991..1838944 (-) 954 WP_000345135.1 class I SAM-dependent methyltransferase Machinery gene
  D39N_RS09285 - 1839005..1839599 (-) 595 Protein_1833 methyltransferase domain-containing protein -
  D39N_RS09290 (D39N_01865) comGG/cglG 1839736..1840149 (-) 414 WP_000265622.1 competence type IV pilus minor pilin ComGG Machinery gene
  D39N_RS09295 (D39N_01866) comGF/cglF 1840127..1840588 (-) 462 WP_000250534.1 competence type IV pilus minor pilin ComGF Machinery gene
  D39N_RS09300 (D39N_01867) comGE/cglE 1840551..1840853 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  D39N_RS09305 (D39N_01868) comGD/cglD 1840816..1841220 (-) 405 WP_000588026.1 competence type IV pilus minor pilin ComGD Machinery gene
  D39N_RS09310 (D39N_01869) comGC/cglC 1841213..1841539 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  D39N_RS09315 (D39N_01870) comGB/cglB 1841541..1842557 (-) 1017 WP_074196785.1 competence type IV pilus assembly protein ComGB Machinery gene
  D39N_RS09320 (D39N_01871) comGA/cglA/cilD 1842505..1843446 (-) 942 WP_000249564.1 competence type IV pilus ATPase ComGA Machinery gene
  D39N_RS09325 (D39N_01872) - 1843522..1843887 (-) 366 WP_000286412.1 DUF1033 family protein -
  D39N_RS09330 (D39N_01873) - 1844038..1845096 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  D39N_RS09335 (D39N_01874) nagA 1845259..1846410 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38392.40 Da        Isoelectric Point: 9.4802

>NTDB_id=481433 D39N_RS09315 WP_074196785.1 1841541..1842557(-) (comGB/cglB) [Streptococcus pneumoniae strain D39_P0]
MDISQVFRLRRKKLATAKQKNIITLFNNLFSSGFHLVETISFLDRSALLDKQCVTQMRVGLSQGKSFSEMMESLGCSSAI
VTQLSLAEVHGNLHLSLGKIEEYLDNLAKVKKKLIEVATYPLILLGFLLLIMLGLRNYLLPQLDSSNIATQIIGNLPQIF
LGMVGLVSVLALLALTFYKRSSKMSVFSILARLPFIGIFVQTYLTAYYAREWGNMISQGMELTQIFQMMQEQGSQLFKEV
GQDLAQTLKNGREFSQTIGTYPFFRKELSLIIEYGEVKSKLGSELEIYAEKTWEAFFTRVNRTMNLVQPLVFIFVALIIV
LLYAAMLMPMYQNMEVNF

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=481433 D39N_RS09315 WP_074196785.1 1841541..1842557(-) (comGB/cglB) [Streptococcus pneumoniae strain D39_P0]
ATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAAGCAAAAAAATATCATCACCCTATTTAA
CAATCTCTTTTCTAGCGGTTTTCATCTGGTGGAGACTATCTCCTTTTTAGATAGGAGTGCTTTGTTGGACAAGCAGTGTG
TGACCCAGATGCGTGTGGGCTTGTCTCAGGGGAAATCATTCTCAGAAATGATGGAAAGTTTGGGATGTTCAAGTGCTATT
GTCACTCAGTTATCCCTAGCTGAAGTTCATGGCAATCTCCACCTGAGTTTGGGAAAGATAGAAGAATATCTGGACAATCT
GGCTAAGGTCAAGAAAAAATTGATTGAAGTAGCGACCTATCCCTTGATTTTGCTGGGTTTTCTTCTCTTAATTATGCTGG
GGCTACGGAATTACCTGCTCCCACAACTGGATAGTAGCAATATTGCCACCCAAATTATCGGTAATCTGCCCCAAATTTTT
CTAGGCATGGTAGGGCTTGTTTCCGTGCTTGCCCTTTTAGCACTCACTTTTTATAAAAGAAGTTCTAAGATGAGTGTCTT
TTCTATCTTAGCACGCCTTCCCTTTATTGGAATCTTTGTGCAGACCTACTTGACAGCCTATTATGCACGTGAATGGGGGA
ATATGATTTCACAGGGAATGGAGTTGACGCAGATTTTTCAAATGATGCAGGAACAAGGTTCCCAGCTCTTTAAAGAAGTC
GGTCAAGATCTGGCTCAAACCCTGAAAAATGGCCGTGAATTTTCTCAGACGATAGGAACCTATCCTTTCTTTAGGAAGGA
ATTGAGTCTCATCATAGAGTATGGGGAAGTTAAGTCCAAGCTGGGTAGTGAGTTGGAAATCTATGCTGAAAAAACTTGGG
AAGCCTTTTTTACCCGAGTCAACCGCACCATGAATTTGGTGCAGCCACTGGTTTTTATCTTTGTGGCACTGATTATCGTT
TTACTTTATGCGGCAATGCTCATGCCCATGTATCAAAATATGGAGGTAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(209-329)

Type II secretion system (T2SS), protein F (T2SSF)

(24-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB/cglB Streptococcus pneumoniae Rx1

100

100

1
  comGB/cglB Streptococcus pneumoniae D39

100

100

1
  comGB/cglB Streptococcus pneumoniae R6

100

100

1
  comGB/cglB Streptococcus pneumoniae TIGR4

100

100

1
  comGB/cglB Streptococcus mitis SK321

95.266

100

0.953
  comGB/cglB Streptococcus mitis NCTC 12261

94.675

100

0.947
  comYB Streptococcus gordonii str. Challis substr. CH1

71.131

99.408

0.707
  comYB Streptococcus mutans UA140

57.547

94.083

0.541
  comYB Streptococcus mutans UA159

57.547

94.083

0.541
  comGB Lactococcus lactis subsp. cremoris KW2

51.198

98.817

0.506