Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   J5Z97_RS04955 Genome accession   NZ_CP072112
Coordinates   968102..969172 (-) Length   356 a.a.
NCBI ID   WP_063662250.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M08500     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 963102..974172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5Z97_RS04935 (J5Z97_04935) citX 963684..964262 (+) 579 WP_002991773.1 citrate lyase holo-[acyl-carrier protein] synthase -
  J5Z97_RS04940 (J5Z97_04940) - 964277..965671 (+) 1395 WP_021340040.1 oxaloacetate decarboxylase subunit alpha -
  J5Z97_RS04945 (J5Z97_04945) citC 965781..966833 (-) 1053 WP_023611459.1 [citrate (pro-3S)-lyase] ligase -
  J5Z97_RS04950 (J5Z97_04950) - 966922..967404 (-) 483 WP_002984600.1 PASTA domain-containing protein -
  J5Z97_RS04955 (J5Z97_04955) xerS 968102..969172 (-) 1071 WP_063662250.1 tyrosine recombinase XerS Machinery gene
  J5Z97_RS04960 (J5Z97_04960) - 969642..970340 (+) 699 WP_002993300.1 S24 family peptidase -
  J5Z97_RS04965 (J5Z97_04965) ffh 970475..972037 (-) 1563 WP_023611415.1 signal recognition particle protein -
  J5Z97_RS04970 (J5Z97_04970) - 972052..972384 (-) 333 WP_002989745.1 putative DNA-binding protein -
  J5Z97_RS04975 (J5Z97_04975) - 972482..973180 (-) 699 WP_002989743.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41441.58 Da        Isoelectric Point: 9.6263

>NTDB_id=480545 J5Z97_RS04955 WP_063662250.1 968102..969172(-) (xerS) [Streptococcus pyogenes strain M08500]
MRRELLLEKIETYKAIMPWYVLDYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTQAPKIADIDLSTLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENGQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETLAFLDYVDKEYEQKLSNRAKSSFRKNKERDLAIIALLLASGVRLSEAVNLDLKDVNLNMMIIEVIRKGGKRDS
VNVAGFAKGYLESYLAVRQRRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSEDFKIRVTPHKLRHTLATRLYDVT
KSQVLVSHQLGHSSTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=480545 J5Z97_RS04955 WP_063662250.1 968102..969172(-) (xerS) [Streptococcus pyogenes strain M08500]
ATGAGACGCGAATTATTACTAGAAAAAATTGAAACCTATAAGGCCATCATGCCTTGGTATGTTTTAGATTATTACCAATC
CAAGTTAGCTGTTCCATACAGCTTTACCACCTTATATGAGTATTTAAAAGAATACAAACGCTTTTTTGATTGGCTGATGG
ATGCTGATTTAACGCAGGCGCCAAAGATTGCTGATATTGACTTGAGCACGCTTGAGCACCTTACCAAGAAGGATTTAGAG
GCCTTTGTGCTTTATTTGCGGGAACGACCTTCTCTCAACACCTATTCCACCAAAGAGGGGCTTTCTCAAACCACTATTAA
TCGGACCTTGTCTGCCCTATCAAGCCTTTACAAGTACTTGACTGAAGAGGTTGAAAATGGCCAAGGGGAGCCTTATTTTT
ATCGGAATGTTATGAAAAAAGTGTCAACAAAAAAGAAAAAAGAAACCCTGGCTTCCAGAGCGGAAAATATTAAGCAGAAA
CTGTTTTTAGGTGATGAAACTCTAGCTTTCTTGGATTATGTGGATAAGGAATATGAGCAAAAATTGTCTAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAGGAGAGGGATTTGGCTATTATTGCTCTACTACTTGCTTCTGGTGTTCGTTTGTCTGAAG
CAGTGAATCTTGATTTAAAAGATGTCAATCTAAATATGATGATTATCGAAGTTATTCGCAAAGGCGGAAAACGTGATTCA
GTCAATGTAGCAGGTTTTGCGAAAGGTTATTTGGAGTCTTATTTAGCTGTTCGTCAGAGACGTTACAAGGCTGAAAAACA
GGATCTTGCTTTCTTTTTAACAGAATACCGTGGCGTTCCAAATCGAATGGATGCTTCTAGTATAGAAAAGATGGTTGGCA
AGTACTCTGAGGATTTTAAAATTCGTGTGACTCCTCACAAATTGCGTCATACGCTAGCGACAAGACTATATGATGTTACT
AAATCTCAGGTGTTAGTTAGTCATCAATTAGGCCATTCCTCTACTCAAGTCACGGATCTTTATACCCATATTGTCAATGA
TGAGCAAAAAAATGCTTTAGATAACCTTTAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(177-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.056

100

0.801