NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	JZM58_RS19650	Genome accession	NZ_CP071797
Coordinates	4444073..4444708 (-)	Length	211 a.a.
NCBI ID	WP_007951559.1	Uniprot ID	A0ABX7GBN9
Organism	Pseudomonas fluorescens strain YK-310
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4439073..4449708

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JZM58_RS19635 (JZM58_19635)	-	4439695..4439967 (-)	273	WP_002552737.1	HU family DNA-binding protein	-
JZM58_RS19640 (JZM58_19640)	lon	4440116..4442512 (-)	2397	WP_207983330.1	endopeptidase La	-
JZM58_RS19645 (JZM58_19645)	clpX	4442676..4443959 (-)	1284	WP_007951558.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
JZM58_RS19650 (JZM58_19650)	clpP	4444073..4444708 (-)	636	WP_007951559.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
JZM58_RS19655 (JZM58_19655)	tig	4444801..4446111 (-)	1311	WP_045121656.1	trigger factor	-
JZM58_RS19680 (JZM58_19680)	folD	4447266..4448120 (+)	855	WP_207983331.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-
JZM58_RS19685 (JZM58_19685)	-	4448437..4449012 (+)	576	WP_207983332.1	hypothetical protein	-

Sequence

Protein

Download Length: 211 a.a. Molecular weight: 23449.84 Da Isoelectric Point: 5.3139

                                >NTDB_id=478905 JZM58_RS19650 WP_007951559.1 4444073..4444708(-) (clpP) [Pseudomonas fluorescens strain YK-310]

MFRNSYIQQNSDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYI

NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEIL

FIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAKEYGLIDEVINQRPA

Nucleotide

Download Length: 636 bp

                                >NTDB_id=478905 JZM58_RS19650 WP_007951559.1 4444073..4444708(-) (clpP) [Pseudomonas fluorescens strain YK-310]

ATGTTCCGTAATTCCTATATTCAGCAGAACTCTGATATCCAGGCCGCCGGCGGCCTGGTCCCGATGGTTGTCGAGCAATC

TGCTCGTGGCGAGCGCGCCTATGACATCTACTCGCGTCTTCTCAAGGAGCGAGTAATTTTTCTGGTGGGTCCTGTAGAGG

ACTACATGGCCAACCTGATTTGCGCGCAATTGCTGTTCCTTGAAGCGGAAAACCCGGACAAGGACATCCATCTTTACATC

AACTCCCCGGGCGGTTCGGTGACAGCGGGCATGTCGATCTACGACACCATGCAGTTCATCAAGCCAAACGTATCGACTAC

CTGTATCGGTCAGGCGTGCAGCATGGGCGCATTCCTGCTGACGGCCGGTGCACCGGGCAAGCGTTTCTGCCTGCCGAACT

CGCGCGTGATGATTCACCAGCCACTGGGCGGCTTCCAGGGCCAGGCATCGGACATCGAAATCCATGCCAAGGAAATCCTC

TTCATCCGCGAGCGTCTGAACACGCTGATGGCCAAGCACAGCGGCCGTACGCTTGAAGAAATCGAGCGCGACACCAACCG

CGACAACTTCATGAGTGCAGAAGCTGCGAAGGAATACGGTCTGATCGACGAAGTGATCAACCAGCGCCCAGCTTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.368	90.047	0.607
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.737	90.047	0.583
clpP	Lactococcus lactis subsp. cremoris KW2	56.771	90.995	0.517
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	55.208	90.995	0.502
clpP	Streptococcus pneumoniae Rx1	53.158	90.047	0.479
clpP	Streptococcus pneumoniae D39	53.158	90.047	0.479
clpP	Streptococcus pneumoniae R6	53.158	90.047	0.479
clpP	Streptococcus pneumoniae TIGR4	53.158	90.047	0.479
clpP	Streptococcus mutans UA159	53.158	90.047	0.479
clpP	Streptococcus pyogenes JRS4	52.632	90.047	0.474
clpP	Streptococcus pyogenes MGAS315	52.632	90.047	0.474
clpP	Streptococcus thermophilus LMG 18311	52.632	90.047	0.474
clpP	Streptococcus thermophilus LMD-9	52.632	90.047	0.474

Detailed information NTG0478905