Detailed information NTG0478904

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: JZM58_RS19645
• Genome accession: NZ_CP071797
• Coordinates: 4442676..4443959 (-)
• Length: 427 a.a.
• NCBI ID: WP_007951558.1
• Uniprot ID: A0ACD2U437
• Organism: Pseudomonas fluorescens strain YK-310
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 4437676..4448959

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JZM58_RS19635 (JZM58_19635)	-	4439695..4439967 (-)	273	WP_002552737.1	HU family DNA-binding protein	-
JZM58_RS19640 (JZM58_19640)	lon	4440116..4442512 (-)	2397	WP_207983330.1	endopeptidase La	-
JZM58_RS19645 (JZM58_19645)	clpX	4442676..4443959 (-)	1284	WP_007951558.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
JZM58_RS19650 (JZM58_19650)	clpP	4444073..4444708 (-)	636	WP_007951559.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
JZM58_RS19655 (JZM58_19655)	tig	4444801..4446111 (-)	1311	WP_045121656.1	trigger factor	-
JZM58_RS19680 (JZM58_19680)	folD	4447266..4448120 (+)	855	WP_207983331.1	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	-

Sequence

Protein

• Length: 427 a.a.
• Molecular weight: 46912.53 Da
• Isoelectric Point: 4.8431

>NTDB_id=478904 JZM58_RS19645 WP_007951558.1 4442676..4443959(-) (clpX) [Pseudomonas fluorescens strain YK-310]
MTDTRNGEDNGKLLYCSFCGKSQHEVRKLIAGPSVFICDECVDLCNDIIREEVQEAQAESSAHKLPSPKEISGILDQYVI
GQERAKKVLAVAVYNHYKRLNQRDKKADDVELGKSNILLIGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQMGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTRNILFICGGAFSGLEKVIQNRSTKGGIGFNAEVRSKEEGKKVGESLREVEPDDLVKFGLIPEFVGRLPVLATLDELDE
AALMQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAKRALERKTGARGLRSILEGVLLDTMYEIPSQSEVSKVVID
ESVIEGKSKPLYIYENSEPAAKAAPDA

Nucleotide

• Length: 1284 bp

>NTDB_id=478904 JZM58_RS19645 WP_007951558.1 4442676..4443959(-) (clpX) [Pseudomonas fluorescens strain YK-310]
ATGACTGACACCCGCAACGGCGAGGACAACGGCAAGCTGCTCTATTGCTCCTTCTGTGGCAAAAGCCAGCATGAAGTGCG
CAAATTGATTGCCGGCCCCTCGGTCTTTATCTGCGACGAGTGCGTCGACCTGTGCAATGACATCATCCGCGAGGAGGTGC
AGGAAGCACAGGCCGAAAGCAGCGCGCATAAATTGCCTTCGCCTAAAGAAATCAGCGGCATCCTTGATCAGTATGTAATT
GGTCAGGAGCGTGCCAAGAAGGTTCTGGCAGTAGCGGTGTACAACCACTACAAGCGTCTGAACCAGCGTGACAAAAAGGC
TGACGACGTCGAACTCGGCAAGAGCAACATTCTGCTGATCGGCCCGACAGGCTCCGGTAAAACCCTGCTGGCCGAAACCC
TGGCCCGCTTGCTGAACGTTCCGTTCACCATCGCCGACGCAACCACCCTCACCGAGGCGGGTTACGTGGGTGAAGACGTC
GAGAACATCATTCAGAAGCTGCTGCAGAAGTGCGATTACGACGTAGAAAAAGCCCAGATGGGTATTGTCTACATCGACGA
AATCGACAAGATTTCGCGCAAGTCCGACAACCCGTCGATCACCCGGGACGTTTCCGGTGAAGGCGTGCAGCAGGCCTTGC
TAAAACTGATCGAGGGCACGGTCGCTTCCGTTCCGCCGCAAGGTGGCCGCAAGCACCCGCAGCAGGAATTCCTTCAGGTT
GATACCCGTAACATCCTGTTCATCTGCGGTGGCGCATTCTCCGGTCTGGAGAAGGTCATTCAGAACCGTTCCACCAAGGG
TGGCATCGGTTTCAACGCAGAAGTGCGCAGCAAGGAAGAGGGCAAGAAAGTCGGTGAATCCCTGCGTGAAGTCGAGCCTG
ACGATCTGGTCAAGTTCGGTCTGATCCCGGAATTCGTCGGTCGTCTGCCGGTTCTTGCGACGCTGGACGAGCTGGATGAG
GCTGCGCTGATGCAGATCCTCACCGAGCCGAAAAATGCCCTGACCAAACAGTATGCCAAGCTGTTCGAGATGGAAGGCGT
GGATCTGGAATTCCGTTCCGACGCGCTGAAATCGGTCGCCAAGCGTGCCCTGGAACGTAAAACCGGTGCCCGTGGCCTGC
GTTCGATTCTCGAAGGTGTGCTGCTCGACACGATGTATGAAATCCCCTCGCAGTCCGAGGTGAGCAAAGTCGTGATCGAT
GAAAGCGTGATCGAAGGCAAGTCCAAGCCACTGTATATCTACGAGAACAGTGAGCCGGCTGCCAAGGCTGCACCGGACGC
GTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (14-51)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-311)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	60.837	95.082	0.578
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.436	94.614	0.534